Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19014 | 3' | -59.2 | NC_004684.1 | + | 42866 | 1.05 | 0.000931 |
Target: 5'- cACACCGCCGUAGAUGGCACCGCCGAAc -3' miRNA: 3'- -UGUGGCGGCAUCUACCGUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 45102 | 0.71 | 0.281451 |
Target: 5'- gGCACCGCCGccgcGcgGGCcuugGCCGCCGc- -3' miRNA: 3'- -UGUGGCGGCau--CuaCCG----UGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 49047 | 0.7 | 0.317663 |
Target: 5'- cGCGCCGCCGgucggcuccggGGgcGGCACCGgCGu- -3' miRNA: 3'- -UGUGGCGGCa----------UCuaCCGUGGCgGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 38739 | 0.66 | 0.556879 |
Target: 5'- uCACCGCCGUcucgcGGCACCGgaaCGGGu -3' miRNA: 3'- uGUGGCGGCAucua-CCGUGGCg--GCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 46627 | 0.75 | 0.147685 |
Target: 5'- cCACCGCCuccgguGUGGAcGGCACCGCCu-- -3' miRNA: 3'- uGUGGCGG------CAUCUaCCGUGGCGGcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 39941 | 0.75 | 0.151693 |
Target: 5'- uCACCGCCGguGGUGGCACCGCg--- -3' miRNA: 3'- uGUGGCGGCauCUACCGUGGCGgcuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 52604 | 0.74 | 0.176475 |
Target: 5'- cGCGCCGCCGUAGuUGuGCgccaguacguccacGCCGCUGAu -3' miRNA: 3'- -UGUGGCGGCAUCuAC-CG--------------UGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 397 | 0.74 | 0.177874 |
Target: 5'- uCACCGCCGUGGcgGGCAa-GCUGGg -3' miRNA: 3'- uGUGGCGGCAUCuaCCGUggCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 43324 | 0.73 | 0.197492 |
Target: 5'- cACGCCGuuGUAGGUGaccGUGCCGUCGGGg -3' miRNA: 3'- -UGUGGCggCAUCUAC---CGUGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 7103 | 0.71 | 0.274615 |
Target: 5'- -gGCCGCCGaGGAccgGGCcacgcaaccgccACCGCCGAGg -3' miRNA: 3'- ugUGGCGGCaUCUa--CCG------------UGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 6068 | 0.72 | 0.228689 |
Target: 5'- uACGCCGCCGaGGgcGGCggcccggcggcgguGCUGCCGGAa -3' miRNA: 3'- -UGUGGCGGCaUCuaCCG--------------UGGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 36970 | 0.73 | 0.187457 |
Target: 5'- cACGCCGCCGUcgaacAGGUguugccacGGCAgCGCCGGGa -3' miRNA: 3'- -UGUGGCGGCA-----UCUA--------CCGUgGCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 706 | 0.79 | 0.072298 |
Target: 5'- cCGCCGCCGggugGGAagaccugGGCACCGCCGGu -3' miRNA: 3'- uGUGGCGGCa---UCUa------CCGUGGCGGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 37426 | 0.72 | 0.229856 |
Target: 5'- gACACCGCCacgguGGUGGCACCGgaggugaCCGAc -3' miRNA: 3'- -UGUGGCGGcau--CUACCGUGGC-------GGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 28580 | 0.79 | 0.078621 |
Target: 5'- gGCACCGCCa-GGcgGGCACCGCCGc- -3' miRNA: 3'- -UGUGGCGGcaUCuaCCGUGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 53654 | 0.74 | 0.18261 |
Target: 5'- aGCACCGagGUGG-UGGCACCGaCCGAc -3' miRNA: 3'- -UGUGGCggCAUCuACCGUGGC-GGCUu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 4497 | 0.72 | 0.230442 |
Target: 5'- gGC-CCGCCGUGGcaacGGCAUgGCCGGGa -3' miRNA: 3'- -UGuGGCGGCAUCua--CCGUGgCGGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 44821 | 0.7 | 0.317663 |
Target: 5'- aACACCGCCGUAccGAccgaugUGGCgauACCGgCGAAc -3' miRNA: 3'- -UGUGGCGGCAU--CU------ACCG---UGGCgGCUU- -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 41720 | 0.77 | 0.106616 |
Target: 5'- -uGCCGCCGUAGGUcgcgcccugcccGGUACCGCCGc- -3' miRNA: 3'- ugUGGCGGCAUCUA------------CCGUGGCGGCuu -5' |
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19014 | 3' | -59.2 | NC_004684.1 | + | 40792 | 0.74 | 0.160006 |
Target: 5'- gACGCCGCCGccGGUGGCgaacccgcgcacACCGCCGc- -3' miRNA: 3'- -UGUGGCGGCauCUACCG------------UGGCGGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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