miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 66382 0.66 0.534997
Target:  5'- aGCugCGCgGUGGAaaucuccgcaccuUGGUGCUugGCCGAGa -3'
miRNA:   3'- -UGugGCGgCAUCU-------------ACCGUGG--CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 64309 0.67 0.475351
Target:  5'- -gGCCGUCGUGG-UGGUugaacACCGCCa-- -3'
miRNA:   3'- ugUGGCGGCAUCuACCG-----UGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 63589 0.66 0.536033
Target:  5'- uGCGCgGCgCGgcGGUGGuUACCGCCu-- -3'
miRNA:   3'- -UGUGgCG-GCauCUACC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 62477 0.67 0.495224
Target:  5'- uUACCGgU---GAUGGUGCCGCCGAGg -3'
miRNA:   3'- uGUGGCgGcauCUACCGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 62094 0.7 0.310149
Target:  5'- cGCGUCGUCGUAGcUGGCGCUGgCGAAc -3'
miRNA:   3'- -UGUGGCGGCAUCuACCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 61312 0.68 0.427514
Target:  5'- aGCACCGCCGccg--GGcCGCCGCCc-- -3'
miRNA:   3'- -UGUGGCGGCaucuaCC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 61229 0.67 0.475351
Target:  5'- cUACCGCCGcacGcUGGcCGCCGCCGu- -3'
miRNA:   3'- uGUGGCGGCau-CuACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 60432 0.67 0.455885
Target:  5'- gGCGuuGCCGUugccGGUGGCGaacuucuucaCGCCGGAc -3'
miRNA:   3'- -UGUggCGGCAu---CUACCGUg---------GCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 60234 0.66 0.536033
Target:  5'- uGCGCgGCUGUucGGUGGCggucACUGCUGGAc -3'
miRNA:   3'- -UGUGgCGGCAu-CUACCG----UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 58388 0.81 0.053047
Target:  5'- gGCACCGCgCGUGGAggccuUGGCccgGCCGCCGGAa -3'
miRNA:   3'- -UGUGGCG-GCAUCU-----ACCG---UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 57901 0.66 0.534997
Target:  5'- -gGCCggGCUGaAGGUGGCcgggcugACCGCCGAu -3'
miRNA:   3'- ugUGG--CGGCaUCUACCG-------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 57497 0.71 0.274614
Target:  5'- aGCGCCGCaCGcAGGUGcCugCGCCGGAu -3'
miRNA:   3'- -UGUGGCG-GCaUCUACcGugGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 56038 0.66 0.505301
Target:  5'- cCACCaCCGUGGGccUGGagGCCGCCGu- -3'
miRNA:   3'- uGUGGcGGCAUCU--ACCg-UGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 55740 0.67 0.455885
Target:  5'- -gGCCGCCGUGc-UGGCGUgGCCGAu -3'
miRNA:   3'- ugUGGCGGCAUcuACCGUGgCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 55382 0.67 0.496227
Target:  5'- cCACCGCCGccgcgaaguccugcgGGGUcaugccgucGGUGCCGCCGGu -3'
miRNA:   3'- uGUGGCGGCa--------------UCUA---------CCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 55175 0.67 0.475351
Target:  5'- aGCACCcCCGgAGAacGCACCGCUGGc -3'
miRNA:   3'- -UGUGGcGGCaUCUacCGUGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 55160 0.67 0.475351
Target:  5'- uCGCCGCCGUcGGgcGGCACguaCCGGAa -3'
miRNA:   3'- uGUGGCGGCA-UCuaCCGUGgc-GGCUU- -5'
19014 3' -59.2 NC_004684.1 + 54346 0.66 0.556879
Target:  5'- aGCGCgGCgGUGGAgauguUGGCAagUGCCGGGg -3'
miRNA:   3'- -UGUGgCGgCAUCU-----ACCGUg-GCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 53654 0.74 0.18261
Target:  5'- aGCACCGagGUGG-UGGCACCGaCCGAc -3'
miRNA:   3'- -UGUGGCggCAUCuACCGUGGC-GGCUu -5'
19014 3' -59.2 NC_004684.1 + 52604 0.74 0.176475
Target:  5'- cGCGCCGCCGUAGuUGuGCgccaguacguccacGCCGCUGAu -3'
miRNA:   3'- -UGUGGCGGCAUCuAC-CG--------------UGGCGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.