Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 62333 | 0.7 | 0.557784 |
Target: 5'- uGGAUCAGGaUCGugggaGCGCCGggUGCcagacgcguGGUGGc -3' miRNA: 3'- -CCUAGUCC-AGC-----UGCGGCa-ACG---------CCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 57820 | 0.71 | 0.52649 |
Target: 5'- cGGAUCAGGUCGGC-CaCGUguucGCGGc-- -3' miRNA: 3'- -CCUAGUCCAGCUGcG-GCAa---CGCCacu -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 43316 | 0.71 | 0.485852 |
Target: 5'- gGGAU--GGUC-ACGCCGUUGUaGGUGAc -3' miRNA: 3'- -CCUAguCCAGcUGCGGCAACG-CCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 36838 | 0.73 | 0.400482 |
Target: 5'- cGAUCAGGUucgacacccgCGACuggucggaGCCGUcgGCGGUGAa -3' miRNA: 3'- cCUAGUCCA----------GCUG--------CGGCAa-CGCCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 65876 | 0.74 | 0.365729 |
Target: 5'- cGGAg-GGGUUGACGCCGUaGUGGUc- -3' miRNA: 3'- -CCUagUCCAGCUGCGGCAaCGCCAcu -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 40227 | 0.74 | 0.357372 |
Target: 5'- ---cCAGGUCGcCGCCGUaGCuGGUGAu -3' miRNA: 3'- ccuaGUCCAGCuGCGGCAaCG-CCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 28733 | 1.11 | 0.001117 |
Target: 5'- uGGAUCAGGUCGACGCCGUUGCGGUGAa -3' miRNA: 3'- -CCUAGUCCAGCUGCGGCAACGCCACU- -5' |
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19044 | 3' | -55.2 | NC_004684.1 | + | 57535 | 0.66 | 0.815853 |
Target: 5'- gGGAUCcGG-CGGCagcucaCCGgcgGCGGUGAu -3' miRNA: 3'- -CCUAGuCCaGCUGc-----GGCaa-CGCCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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