Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 15067 | 0.77 | 0.248341 |
Target: 5'- cGGAUgAGGUCGACGgccuuaUCGgcGCGGUGGc -3' miRNA: 3'- -CCUAgUCCAGCUGC------GGCaaCGCCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 45763 | 0.66 | 0.787801 |
Target: 5'- aGGuUCuuGGUC-ACGCCGgUGCGGUa- -3' miRNA: 3'- -CCuAGu-CCAGcUGCGGCaACGCCAcu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 42166 | 0.67 | 0.748293 |
Target: 5'- ----uGGGUCGagaGCGCCGcacugcGCGGUGAg -3' miRNA: 3'- ccuagUCCAGC---UGCGGCaa----CGCCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 67194 | 0.67 | 0.738109 |
Target: 5'- cGGGUCAcGGUCu-CGCCGUUcggcaggucaaCGGUGAa -3' miRNA: 3'- -CCUAGU-CCAGcuGCGGCAAc----------GCCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 65868 | 0.67 | 0.717448 |
Target: 5'- cGGGUCGcGUCGuCGCCGUUgagcGCGGc-- -3' miRNA: 3'- -CCUAGUcCAGCuGCGGCAA----CGCCacu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 20985 | 0.68 | 0.706991 |
Target: 5'- cGGcgCAGGUCGGC-CCGauccUGCGGc-- -3' miRNA: 3'- -CCuaGUCCAGCUGcGGCa---ACGCCacu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 48043 | 0.69 | 0.653871 |
Target: 5'- cGAUCAGG-CGGCGCa--UGCGGaUGGc -3' miRNA: 3'- cCUAGUCCaGCUGCGgcaACGCC-ACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 64966 | 0.69 | 0.643151 |
Target: 5'- cGGuUCAGGUCGAUGaCCGcgacGCGGg-- -3' miRNA: 3'- -CCuAGUCCAGCUGC-GGCaa--CGCCacu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 16783 | 0.7 | 0.557784 |
Target: 5'- gGGAcCAGGUgCGGCG-CGUcgUGUGGUGGg -3' miRNA: 3'- -CCUaGUCCA-GCUGCgGCA--ACGCCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 6845 | 0.7 | 0.557784 |
Target: 5'- cGGcgCgaAGGgCGACGCCGUgGUGGUGc -3' miRNA: 3'- -CCuaG--UCCaGCUGCGGCAaCGCCACu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 53803 | 0.71 | 0.52649 |
Target: 5'- gGGAUCGGGUUG-CGCCuccaUGCGGg-- -3' miRNA: 3'- -CCUAGUCCAGCuGCGGca--ACGCCacu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 18846 | 0.73 | 0.41863 |
Target: 5'- aGGUCGGGUCGugGUCGgUGaccgGGUGGc -3' miRNA: 3'- cCUAGUCCAGCugCGGCaACg---CCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 66723 | 0.69 | 0.621689 |
Target: 5'- aGGAUCAGG-CGcACGCUGUcgUGCGcGUcGGu -3' miRNA: 3'- -CCUAGUCCaGC-UGCGGCA--ACGC-CA-CU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 62333 | 0.7 | 0.557784 |
Target: 5'- uGGAUCAGGaUCGugggaGCGCCGggUGCcagacgcguGGUGGc -3' miRNA: 3'- -CCUAGUCC-AGC-----UGCGGCa-ACG---------CCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 57820 | 0.71 | 0.52649 |
Target: 5'- cGGAUCAGGUCGGC-CaCGUguucGCGGc-- -3' miRNA: 3'- -CCUAGUCCAGCUGcG-GCAa---CGCCacu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 43316 | 0.71 | 0.485852 |
Target: 5'- gGGAU--GGUC-ACGCCGUUGUaGGUGAc -3' miRNA: 3'- -CCUAguCCAGcUGCGGCAACG-CCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 36838 | 0.73 | 0.400482 |
Target: 5'- cGAUCAGGUucgacacccgCGACuggucggaGCCGUcgGCGGUGAa -3' miRNA: 3'- cCUAGUCCA----------GCUG--------CGGCAa-CGCCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 65876 | 0.74 | 0.365729 |
Target: 5'- cGGAg-GGGUUGACGCCGUaGUGGUc- -3' miRNA: 3'- -CCUagUCCAGCUGCGGCAaCGCCAcu -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 40227 | 0.74 | 0.357372 |
Target: 5'- ---cCAGGUCGcCGCCGUaGCuGGUGAu -3' miRNA: 3'- ccuaGUCCAGCuGCGGCAaCG-CCACU- -5' |
|||||||
19044 | 3' | -55.2 | NC_004684.1 | + | 57535 | 0.66 | 0.815853 |
Target: 5'- gGGAUCcGG-CGGCagcucaCCGgcgGCGGUGAu -3' miRNA: 3'- -CCUAGuCCaGCUGc-----GGCaa-CGCCACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home