miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 3' -55.2 NC_004684.1 + 28733 1.11 0.001117
Target:  5'- uGGAUCAGGUCGACGCCGUUGCGGUGAa -3'
miRNA:   3'- -CCUAGUCCAGCUGCGGCAACGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 15067 0.77 0.248341
Target:  5'- cGGAUgAGGUCGACGgccuuaUCGgcGCGGUGGc -3'
miRNA:   3'- -CCUAgUCCAGCUGC------GGCaaCGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 40227 0.74 0.357372
Target:  5'- ---cCAGGUCGcCGCCGUaGCuGGUGAu -3'
miRNA:   3'- ccuaGUCCAGCuGCGGCAaCG-CCACU- -5'
19044 3' -55.2 NC_004684.1 + 65876 0.74 0.365729
Target:  5'- cGGAg-GGGUUGACGCCGUaGUGGUc- -3'
miRNA:   3'- -CCUagUCCAGCUGCGGCAaCGCCAcu -5'
19044 3' -55.2 NC_004684.1 + 36838 0.73 0.400482
Target:  5'- cGAUCAGGUucgacacccgCGACuggucggaGCCGUcgGCGGUGAa -3'
miRNA:   3'- cCUAGUCCA----------GCUG--------CGGCAa-CGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 18846 0.73 0.41863
Target:  5'- aGGUCGGGUCGugGUCGgUGaccgGGUGGc -3'
miRNA:   3'- cCUAGUCCAGCugCGGCaACg---CCACU- -5'
19044 3' -55.2 NC_004684.1 + 43316 0.71 0.485852
Target:  5'- gGGAU--GGUC-ACGCCGUUGUaGGUGAc -3'
miRNA:   3'- -CCUAguCCAGcUGCGGCAACG-CCACU- -5'
19044 3' -55.2 NC_004684.1 + 53803 0.71 0.52649
Target:  5'- gGGAUCGGGUUG-CGCCuccaUGCGGg-- -3'
miRNA:   3'- -CCUAGUCCAGCuGCGGca--ACGCCacu -5'
19044 3' -55.2 NC_004684.1 + 57820 0.71 0.52649
Target:  5'- cGGAUCAGGUCGGC-CaCGUguucGCGGc-- -3'
miRNA:   3'- -CCUAGUCCAGCUGcG-GCAa---CGCCacu -5'
19044 3' -55.2 NC_004684.1 + 16783 0.7 0.557784
Target:  5'- gGGAcCAGGUgCGGCG-CGUcgUGUGGUGGg -3'
miRNA:   3'- -CCUaGUCCA-GCUGCgGCA--ACGCCACU- -5'
19044 3' -55.2 NC_004684.1 + 6845 0.7 0.557784
Target:  5'- cGGcgCgaAGGgCGACGCCGUgGUGGUGc -3'
miRNA:   3'- -CCuaG--UCCaGCUGCGGCAaCGCCACu -5'
19044 3' -55.2 NC_004684.1 + 62333 0.7 0.557784
Target:  5'- uGGAUCAGGaUCGugggaGCGCCGggUGCcagacgcguGGUGGc -3'
miRNA:   3'- -CCUAGUCC-AGC-----UGCGGCa-ACG---------CCACU- -5'
19044 3' -55.2 NC_004684.1 + 66723 0.69 0.621689
Target:  5'- aGGAUCAGG-CGcACGCUGUcgUGCGcGUcGGu -3'
miRNA:   3'- -CCUAGUCCaGC-UGCGGCA--ACGC-CA-CU- -5'
19044 3' -55.2 NC_004684.1 + 58566 0.69 0.63242
Target:  5'- -aGUCGGGcgaUGGCGUCGUUGCGGg-- -3'
miRNA:   3'- ccUAGUCCa--GCUGCGGCAACGCCacu -5'
19044 3' -55.2 NC_004684.1 + 64966 0.69 0.643151
Target:  5'- cGGuUCAGGUCGAUGaCCGcgacGCGGg-- -3'
miRNA:   3'- -CCuAGUCCAGCUGC-GGCaa--CGCCacu -5'
19044 3' -55.2 NC_004684.1 + 48043 0.69 0.653871
Target:  5'- cGAUCAGG-CGGCGCa--UGCGGaUGGc -3'
miRNA:   3'- cCUAGUCCaGCUGCGgcaACGCC-ACU- -5'
19044 3' -55.2 NC_004684.1 + 20985 0.68 0.706991
Target:  5'- cGGcgCAGGUCGGC-CCGauccUGCGGc-- -3'
miRNA:   3'- -CCuaGUCCAGCUGcGGCa---ACGCCacu -5'
19044 3' -55.2 NC_004684.1 + 29491 0.67 0.717448
Target:  5'- -cAUCAGGuugUCGAUGCCGUUGU--UGAg -3'
miRNA:   3'- ccUAGUCC---AGCUGCGGCAACGccACU- -5'
19044 3' -55.2 NC_004684.1 + 65868 0.67 0.717448
Target:  5'- cGGGUCGcGUCGuCGCCGUUgagcGCGGc-- -3'
miRNA:   3'- -CCUAGUcCAGCuGCGGCAA----CGCCacu -5'
19044 3' -55.2 NC_004684.1 + 45445 0.67 0.72472
Target:  5'- aGGcGUCAauGUCGACGCCGagguugaugcucccgGCGGUGGu -3'
miRNA:   3'- -CC-UAGUc-CAGCUGCGGCaa-------------CGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.