Results 21 - 40 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 30613 | 0.66 | 0.655139 |
Target: 5'- cGCCGCcgaCCAGcguCGGCaccGggCGCGGCCc -3' miRNA: 3'- aUGGCG---GGUCu--GCCGa--CuaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 5884 | 0.66 | 0.676582 |
Target: 5'- cACCaGCCUGaccggguggcGGCGGCgcUGAUCGCGcacgACCg -3' miRNA: 3'- aUGG-CGGGU----------CUGCCG--ACUAGCGU----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 13909 | 0.66 | 0.676582 |
Target: 5'- cACCGacggCCAGAucgacagcUGGCUGGcggcUCGCAACa -3' miRNA: 3'- aUGGCg---GGUCU--------GCCGACU----AGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 3802 | 0.66 | 0.676582 |
Target: 5'- cGCCGCCUuGGCGGUcaaggaucugcUGggCGCGuucggcguGCCg -3' miRNA: 3'- aUGGCGGGuCUGCCG-----------ACuaGCGU--------UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 2452 | 0.66 | 0.665876 |
Target: 5'- -cCCGCCUGGGCGGCcagcucgGcgUGCcguACCa -3' miRNA: 3'- auGGCGGGUCUGCCGa------CuaGCGu--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 17798 | 0.66 | 0.687248 |
Target: 5'- -gUCGCCggaaaugaAGGCGGCUGA--GCAGCUg -3' miRNA: 3'- auGGCGGg-------UCUGCCGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 28953 | 0.66 | 0.637922 |
Target: 5'- gACUGCCaCaaccuccgacuucgaGGugGaGCUGAgccugCGCGACCg -3' miRNA: 3'- aUGGCGG-G---------------UCugC-CGACUa----GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 3818 | 0.66 | 0.644382 |
Target: 5'- cGCCGCgCAGGCcgauGGacCUGAUgGCAGCg -3' miRNA: 3'- aUGGCGgGUCUG----CC--GACUAgCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 25320 | 0.66 | 0.633615 |
Target: 5'- -uCgGCCCuGGCGGCguAUgGCGGCCu -3' miRNA: 3'- auGgCGGGuCUGCCGacUAgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 64533 | 0.66 | 0.633615 |
Target: 5'- --aCGCCCAG-CGGCUcg--GCGGCCu -3' miRNA: 3'- augGCGGGUCuGCCGAcuagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 16317 | 0.66 | 0.662657 |
Target: 5'- gGCCGCcggugauguaaugaCCAGcgaggaGCGGCUGG-CGCuGGCCg -3' miRNA: 3'- aUGGCG--------------GGUC------UGCCGACUaGCG-UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 60190 | 0.66 | 0.665876 |
Target: 5'- cGCgGCCUggcaGGAUGuGCUGAUCgGCGuugGCCu -3' miRNA: 3'- aUGgCGGG----UCUGC-CGACUAG-CGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 58374 | 0.66 | 0.676582 |
Target: 5'- uUGCCGCCCcGcACGGCaccgCGCGuggagGCCu -3' miRNA: 3'- -AUGGCGGGuC-UGCCGacuaGCGU-----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 10579 | 0.66 | 0.670162 |
Target: 5'- -cCCGCCgAucCGGCUGGUucggcgcgcgaggugCGCAACUg -3' miRNA: 3'- auGGCGGgUcuGCCGACUA---------------GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 39328 | 0.66 | 0.665876 |
Target: 5'- uUGCCgcGCCCAGGcCGGUUGGcCGC--CCa -3' miRNA: 3'- -AUGG--CGGGUCU-GCCGACUaGCGuuGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 24490 | 0.66 | 0.665876 |
Target: 5'- cUACCGCCgGgGGCGGUgc--CGCAggGCCg -3' miRNA: 3'- -AUGGCGGgU-CUGCCGacuaGCGU--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 24912 | 0.66 | 0.676582 |
Target: 5'- cGCCGCCgcgauCAG-CGcGCUGggCGgCGACCc -3' miRNA: 3'- aUGGCGG-----GUCuGC-CGACuaGC-GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 50097 | 0.66 | 0.676582 |
Target: 5'- cACCacgaCCAGGCGGCUGGcccccaccUCGaUGGCCa -3' miRNA: 3'- aUGGcg--GGUCUGCCGACU--------AGC-GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 28657 | 0.66 | 0.687248 |
Target: 5'- gUGCCG-CgAGACGGCggUGAcgcaggugauUCGCAACg -3' miRNA: 3'- -AUGGCgGgUCUGCCG--ACU----------AGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 52908 | 0.66 | 0.687248 |
Target: 5'- -uCCGgCCAGcACGGCgg--CGUGGCCg -3' miRNA: 3'- auGGCgGGUC-UGCCGacuaGCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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