miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 39328 0.66 0.665876
Target:  5'- uUGCCgcGCCCAGGcCGGUUGGcCGC--CCa -3'
miRNA:   3'- -AUGG--CGGGUCU-GCCGACUaGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 24912 0.66 0.676582
Target:  5'- cGCCGCCgcgauCAG-CGcGCUGggCGgCGACCc -3'
miRNA:   3'- aUGGCGG-----GUCuGC-CGACuaGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26949 0.66 0.687248
Target:  5'- gGCCGCCUGGGCaccGCUGAcCaaGGCCg -3'
miRNA:   3'- aUGGCGGGUCUGc--CGACUaGcgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 43388 0.66 0.644382
Target:  5'- --aUGCCC-GACGGCccggagaacgGGUCGCcGCCg -3'
miRNA:   3'- augGCGGGuCUGCCGa---------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 54983 0.66 0.655139
Target:  5'- gGCCGCCgaccacagCGGACGGCUcc-UGCGGCa -3'
miRNA:   3'- aUGGCGG--------GUCUGCCGAcuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 28953 0.66 0.637922
Target:  5'- gACUGCCaCaaccuccgacuucgaGGugGaGCUGAgccugCGCGACCg -3'
miRNA:   3'- aUGGCGG-G---------------UCugC-CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 24490 0.66 0.665876
Target:  5'- cUACCGCCgGgGGCGGUgc--CGCAggGCCg -3'
miRNA:   3'- -AUGGCGGgU-CUGCCGacuaGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 13909 0.66 0.676582
Target:  5'- cACCGacggCCAGAucgacagcUGGCUGGcggcUCGCAACa -3'
miRNA:   3'- aUGGCg---GGUCU--------GCCGACU----AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 28159 0.66 0.633615
Target:  5'- cUACgGCCUgcaAUGGCUGGcgUGCAACCu -3'
miRNA:   3'- -AUGgCGGGuc-UGCCGACUa-GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42924 0.66 0.636845
Target:  5'- cGCCGCCaggugauacccuGACGGCgcuuguggcugcugUGGUUGUGGCCg -3'
miRNA:   3'- aUGGCGGgu----------CUGCCG--------------ACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 4419 0.66 0.633615
Target:  5'- gGCCGCCggaacaacgcgCGGGCcuGCUGG-CGCAGCUg -3'
miRNA:   3'- aUGGCGG-----------GUCUGc-CGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 16317 0.66 0.662657
Target:  5'- gGCCGCcggugauguaaugaCCAGcgaggaGCGGCUGG-CGCuGGCCg -3'
miRNA:   3'- aUGGCG--------------GGUC------UGCCGACUaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 3802 0.66 0.676582
Target:  5'- cGCCGCCUuGGCGGUcaaggaucugcUGggCGCGuucggcguGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCG-----------ACuaGCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 60190 0.66 0.665876
Target:  5'- cGCgGCCUggcaGGAUGuGCUGAUCgGCGuugGCCu -3'
miRNA:   3'- aUGgCGGG----UCUGC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 25320 0.66 0.633615
Target:  5'- -uCgGCCCuGGCGGCguAUgGCGGCCu -3'
miRNA:   3'- auGgCGGGuCUGCCGacUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 52384 0.66 0.655139
Target:  5'- aGCCGaUCCAGGCGGC-GGUCagGCAGu- -3'
miRNA:   3'- aUGGC-GGGUCUGCCGaCUAG--CGUUgg -5'
19044 5' -57.1 NC_004684.1 + 15287 0.66 0.633615
Target:  5'- cACCaGCCC-GACguuuGGCUGG-CGCGACg -3'
miRNA:   3'- aUGG-CGGGuCUG----CCGACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.665876
Target:  5'- -cCCGCCUGGGCGGCcagcucgGcgUGCcguACCa -3'
miRNA:   3'- auGGCGGGUCUGCCGa------CuaGCGu--UGG- -5'
19044 5' -57.1 NC_004684.1 + 64533 0.66 0.633615
Target:  5'- --aCGCCCAG-CGGCUcg--GCGGCCu -3'
miRNA:   3'- augGCGGGUCuGCCGAcuagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10579 0.66 0.670162
Target:  5'- -cCCGCCgAucCGGCUGGUucggcgcgcgaggugCGCAACUg -3'
miRNA:   3'- auGGCGGgUcuGCCGACUA---------------GCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.