miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 144 0.67 0.566107
Target:  5'- cGCCaGCCCGGAaacgccggucgaacCGGUgaccggguUGGUCGgGACCa -3'
miRNA:   3'- aUGG-CGGGUCU--------------GCCG--------ACUAGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 398 0.66 0.676582
Target:  5'- cACCGCCguGGCGggcaaGCUGG--GCGACUg -3'
miRNA:   3'- aUGGCGGguCUGC-----CGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 706 0.68 0.558696
Target:  5'- aGCCGCCgguGGACGGCcUGG-CGCu-CCa -3'
miRNA:   3'- aUGGCGGg--UCUGCCG-ACUaGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 871 0.71 0.383043
Target:  5'- -cCCGCCgGGcCGcGCUGAagGCGGCCc -3'
miRNA:   3'- auGGCGGgUCuGC-CGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 919 0.67 0.590621
Target:  5'- aGCCGCCaccggguGGCGGCgugGAgacaaCGCcGCCa -3'
miRNA:   3'- aUGGCGGgu-----CUGCCGa--CUa----GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 1255 0.7 0.400751
Target:  5'- gGCCccgGCCCAGAUGcGCUGGcUgGUGGCCa -3'
miRNA:   3'- aUGG---CGGGUCUGC-CGACU-AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 1405 0.78 0.142889
Target:  5'- cUACCGguaCGGGCGGCUGAgccugCGCGACCc -3'
miRNA:   3'- -AUGGCgg-GUCUGCCGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 1517 0.66 0.665876
Target:  5'- cGCCGCgCUcaACGGCgacGA-CGCGACCc -3'
miRNA:   3'- aUGGCG-GGucUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 1591 0.66 0.665876
Target:  5'- cACCuGCCCGGugcACGGCaucGGUCGcCGugCg -3'
miRNA:   3'- aUGG-CGGGUC---UGCCGa--CUAGC-GUugG- -5'
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.665876
Target:  5'- -cCCGCCUGGGCGGCcagcucgGcgUGCcguACCa -3'
miRNA:   3'- auGGCGGGUCUGCCGa------CuaGCGu--UGG- -5'
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.648687
Target:  5'- cACCGCCCgccAGGC-GCUcaccgccgccaccugGGUCGCcGCCa -3'
miRNA:   3'- aUGGCGGG---UCUGcCGA---------------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.67 0.569291
Target:  5'- aGCCGCUgGGcgucauCGGUgccUGGUgGCAGCCg -3'
miRNA:   3'- aUGGCGGgUCu-----GCCG---ACUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.69 0.486469
Target:  5'- -gUCGCgCCGGACGaccuGCUGGUgCGCAACa -3'
miRNA:   3'- auGGCG-GGUCUGC----CGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 2976 0.66 0.633615
Target:  5'- cGgUGCCCuGGACGGCggGggCGC-ACCu -3'
miRNA:   3'- aUgGCGGG-UCUGCCGa-CuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 3652 0.66 0.633615
Target:  5'- gGCCGCCCGGugcCGGgUcAUCGUAcggugGCCc -3'
miRNA:   3'- aUGGCGGGUCu--GCCgAcUAGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 3769 0.69 0.466632
Target:  5'- gACCGCgaaCAGGCGaaGCUGAUgGCGuCCg -3'
miRNA:   3'- aUGGCGg--GUCUGC--CGACUAgCGUuGG- -5'
19044 5' -57.1 NC_004684.1 + 3802 0.66 0.676582
Target:  5'- cGCCGCCUuGGCGGUcaaggaucugcUGggCGCGuucggcguGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCG-----------ACuaGCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 3818 0.66 0.644382
Target:  5'- cGCCGCgCAGGCcgauGGacCUGAUgGCAGCg -3'
miRNA:   3'- aUGGCGgGUCUG----CC--GACUAgCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 3891 0.69 0.456872
Target:  5'- gGCCGCCCuGcUGGCgcaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGGuCuGCCGacua-GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 3937 0.7 0.437687
Target:  5'- aUGCCGgaaCUGGGCGGC-GAagGCGACCa -3'
miRNA:   3'- -AUGGCg--GGUCUGCCGaCUagCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.