miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 7560 0.7 0.400751
Target:  5'- gACCGgcCCCGGguggcgcugguGCGGCUGGUgCGCGGCa -3'
miRNA:   3'- aUGGC--GGGUC-----------UGCCGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 19450 0.71 0.349222
Target:  5'- cGCCcauGCCCGGGCGGCggUGGcccgCGCGACa -3'
miRNA:   3'- aUGG---CGGGUCUGCCG--ACUa---GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 59385 0.71 0.357475
Target:  5'- aACCGCCCGG-CGGCacaGUCGCuGCa -3'
miRNA:   3'- aUGGCGGGUCuGCCGac-UAGCGuUGg -5'
19044 5' -57.1 NC_004684.1 + 17557 0.71 0.365863
Target:  5'- gACCGCCUGGACGaGgUGcgCGCAcuguaaggugcACCg -3'
miRNA:   3'- aUGGCGGGUCUGC-CgACuaGCGU-----------UGG- -5'
19044 5' -57.1 NC_004684.1 + 27093 0.71 0.374386
Target:  5'- cGCCGCCCAGAuCGGUaccGAcuUUGCGcugGCCg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGa--CU--AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 57734 0.71 0.383043
Target:  5'- gGCaCGCCCAGGCGGCaGcugCGCAGu- -3'
miRNA:   3'- aUG-GCGGGUCUGCCGaCua-GCGUUgg -5'
19044 5' -57.1 NC_004684.1 + 23531 0.71 0.391832
Target:  5'- aGCCuGCUCAccaaccucGGCGGCaucGGUCGCGGCCu -3'
miRNA:   3'- aUGG-CGGGU--------CUGCCGa--CUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15514 0.71 0.394494
Target:  5'- gGCCGCCCggggccgggcgcuGGAgGcGCUGAUCcgcguugguggaccgGCGACCa -3'
miRNA:   3'- aUGGCGGG-------------UCUgC-CGACUAG---------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 60754 0.7 0.398062
Target:  5'- gGCCGCCgGGugGGggUUGGUCaggacuugaagaugGCGACCa -3'
miRNA:   3'- aUGGCGGgUCugCC--GACUAG--------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 12235 0.71 0.349222
Target:  5'- gUGCCGCCC-GACGGCggcGAUC-CggUCa -3'
miRNA:   3'- -AUGGCGGGuCUGCCGa--CUAGcGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 63460 0.72 0.333127
Target:  5'- cGCCGCCCAGuucCGGCauucggGggCGCGagGCCu -3'
miRNA:   3'- aUGGCGGGUCu--GCCGa-----CuaGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 61492 0.72 0.333127
Target:  5'- cGCCGCgCAGGCGGCggcgcucGAUgCGC-GCCa -3'
miRNA:   3'- aUGGCGgGUCUGCCGa------CUA-GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 61328 0.81 0.089478
Target:  5'- cGCCGCCCucGGCGGCguaGGUgGCGGCCa -3'
miRNA:   3'- aUGGCGGGu-CUGCCGa--CUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 1405 0.78 0.142889
Target:  5'- cUACCGguaCGGGCGGCUGAgccugCGCGACCc -3'
miRNA:   3'- -AUGGCgg-GUCUGCCGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63052 0.76 0.191657
Target:  5'- gACCGCCUA-ACGGUUGGUgGCGGCUa -3'
miRNA:   3'- aUGGCGGGUcUGCCGACUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 36231 0.75 0.207293
Target:  5'- cACCGCCgAGACcGCUGG-CGUGGCCa -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63356 0.75 0.218319
Target:  5'- gACCGCCCAGcgcaccgaGCGGCcGAcgCGcCAGCCg -3'
miRNA:   3'- aUGGCGGGUC--------UGCCGaCUa-GC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 58620 0.74 0.235795
Target:  5'- gACgGCCCGuGGCGGCUGGUgcCGCGcuggGCCu -3'
miRNA:   3'- aUGgCGGGU-CUGCCGACUA--GCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 40520 0.73 0.28815
Target:  5'- cGCaCGCCCAGGuuguCGGC-GGUgGCGACCu -3'
miRNA:   3'- aUG-GCGGGUCU----GCCGaCUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 58734 0.72 0.317583
Target:  5'- gGCCGCaCCGGGCacGCaUGAUCGCGuuGCCc -3'
miRNA:   3'- aUGGCG-GGUCUGc-CG-ACUAGCGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.