miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 28769 0.95 0.008219
Target:  5'- aUACCGCCCAGACGGCUGAUCGacACCu -3'
miRNA:   3'- -AUGGCGGGUCUGCCGACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 42475 0.88 0.028645
Target:  5'- cGCCGCCCAG-CGcGCUGAUCGCGGCg -3'
miRNA:   3'- aUGGCGGGUCuGC-CGACUAGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 33253 0.82 0.069492
Target:  5'- gUGCCGCCCgAGGCGGCgagGAaCGUGACCg -3'
miRNA:   3'- -AUGGCGGG-UCUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 4886 0.82 0.069492
Target:  5'- gGCgGCUCAGGCGGcCUGGUCGCcACCg -3'
miRNA:   3'- aUGgCGGGUCUGCC-GACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 66692 0.81 0.082273
Target:  5'- gGCCGUCCAccGGCGGCUGAccUCGgGGCCg -3'
miRNA:   3'- aUGGCGGGU--CUGCCGACU--AGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61328 0.81 0.089478
Target:  5'- cGCCGCCCucGGCGGCguaGGUgGCGGCCa -3'
miRNA:   3'- aUGGCGGGu-CUGCCGa--CUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 51998 0.78 0.12816
Target:  5'- gGCCGCCCcGAUGGCggccUCGUAGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCGacu-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61172 0.78 0.12816
Target:  5'- gGCCGCCCAGcUGGCcgaGAUCGC-GCCg -3'
miRNA:   3'- aUGGCGGGUCuGCCGa--CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 1405 0.78 0.142889
Target:  5'- cUACCGguaCGGGCGGCUGAgccugCGCGACCc -3'
miRNA:   3'- -AUGGCgg-GUCUGCCGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63052 0.76 0.191657
Target:  5'- gACCGCCUA-ACGGUUGGUgGCGGCUa -3'
miRNA:   3'- aUGGCGGGUcUGCCGACUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 36231 0.75 0.207293
Target:  5'- cACCGCCgAGACcGCUGG-CGUGGCCa -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61461 0.75 0.212744
Target:  5'- gACCGCCCGG-UGGCcag-CGCGGCCa -3'
miRNA:   3'- aUGGCGGGUCuGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 63356 0.75 0.218319
Target:  5'- gACCGCCCAGcgcaccgaGCGGCcGAcgCGcCAGCCg -3'
miRNA:   3'- aUGGCGGGUC--------UGCCGaCUa-GC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57982 0.75 0.218319
Target:  5'- gGCUGUCCAGGCuGGcCUGAUCGCugUCg -3'
miRNA:   3'- aUGGCGGGUCUG-CC-GACUAGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 32550 0.74 0.229843
Target:  5'- aACCGCCC--ACGGCUGcaugCGCAGCa -3'
miRNA:   3'- aUGGCGGGucUGCCGACua--GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 58620 0.74 0.235795
Target:  5'- gACgGCCCGuGGCGGCUGGUgcCGCGcuggGCCu -3'
miRNA:   3'- aUGgCGGGU-CUGCCGACUA--GCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 23699 0.74 0.248087
Target:  5'- aGCUGCCCAGGCGGU--GUCG-GACCu -3'
miRNA:   3'- aUGGCGGGUCUGCCGacUAGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15014 0.74 0.263532
Target:  5'- cGCCGCCUGGAuCGGCUGGgacggcaccaucgagUCGguGCUg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGACU---------------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 21509 0.73 0.266847
Target:  5'- cGCCGCCagcguGGACGGCgcgcacaUGAUCGCcgacGCCa -3'
miRNA:   3'- aUGGCGGg----UCUGCCG-------ACUAGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 49844 0.73 0.267513
Target:  5'- -cUCGUCCAGGCGGUccUGGUagGCGACCa -3'
miRNA:   3'- auGGCGGGUCUGCCG--ACUAg-CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.