miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 3652 0.66 0.633615
Target:  5'- gGCCGCCCGGugcCGGgUcAUCGUAcggugGCCc -3'
miRNA:   3'- aUGGCGGGUCu--GCCgAcUAGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 2976 0.66 0.633615
Target:  5'- cGgUGCCCuGGACGGCggGggCGC-ACCu -3'
miRNA:   3'- aUgGCGGG-UCUGCCGa-CuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 16255 0.66 0.633615
Target:  5'- gGCgGCgCAGAuucguCGGCaGAugcUCGCGGCCa -3'
miRNA:   3'- aUGgCGgGUCU-----GCCGaCU---AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10561 0.66 0.633615
Target:  5'- aGCUGCgCCAGGUGGUcgUGGUCGaUGGCCa -3'
miRNA:   3'- aUGGCG-GGUCUGCCG--ACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26840 0.66 0.633615
Target:  5'- -uUCGCCCAGcuccuggaggucGCGGa-GGUCGCcACCg -3'
miRNA:   3'- auGGCGGGUC------------UGCCgaCUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 39335 0.66 0.633615
Target:  5'- cACCGCCgGGGCcgaccaccGGCaUGAucUCGCGcucuGCCg -3'
miRNA:   3'- aUGGCGGgUCUG--------CCG-ACU--AGCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 64533 0.66 0.633615
Target:  5'- --aCGCCCAG-CGGCUcg--GCGGCCu -3'
miRNA:   3'- augGCGGGUCuGCCGAcuagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15287 0.66 0.633615
Target:  5'- cACCaGCCC-GACguuuGGCUGG-CGCGACg -3'
miRNA:   3'- aUGG-CGGGuCUG----CCGACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 25320 0.66 0.633615
Target:  5'- -uCgGCCCuGGCGGCguAUgGCGGCCu -3'
miRNA:   3'- auGgCGGGuCUGCCGacUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 4419 0.66 0.633615
Target:  5'- gGCCGCCggaacaacgcgCGGGCcuGCUGG-CGCAGCUg -3'
miRNA:   3'- aUGGCGG-----------GUCUGc-CGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 28159 0.66 0.633615
Target:  5'- cUACgGCCUgcaAUGGCUGGcgUGCAACCu -3'
miRNA:   3'- -AUGgCGGGuc-UGCCGACUa-GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 23854 0.67 0.627153
Target:  5'- gGCCgagugggagGCCCAGugGgaggaggaccacaacGCUGGUCcCGACCg -3'
miRNA:   3'- aUGG---------CGGGUCugC---------------CGACUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 65918 0.67 0.622846
Target:  5'- cGCCGCaCCGGGCacguccGGCccGGUCuCGACCa -3'
miRNA:   3'- aUGGCG-GGUCUG------CCGa-CUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27126 0.67 0.622846
Target:  5'- cGuuGCCgGGAC-GCUGAUCGaCGugCu -3'
miRNA:   3'- aUggCGGgUCUGcCGACUAGC-GUugG- -5'
19044 5' -57.1 NC_004684.1 + 23856 0.67 0.622846
Target:  5'- cACCGUUCGGA-GGUgg--CGCAGCCa -3'
miRNA:   3'- aUGGCGGGUCUgCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 65433 0.67 0.622846
Target:  5'- cGCUGCgCuGGCGuGCgGcgCGCGGCCa -3'
miRNA:   3'- aUGGCGgGuCUGC-CGaCuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 43692 0.67 0.621769
Target:  5'- cGCCGCCCAGGuuggaGGCcacgcucUGGUCcgggcCGACCa -3'
miRNA:   3'- aUGGCGGGUCUg----CCG-------ACUAGc----GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 17276 0.67 0.621769
Target:  5'- aACUGCUCGG-CGGCgcugGuuuucuggccgggGUCGCGGCCc -3'
miRNA:   3'- aUGGCGGGUCuGCCGa---C-------------UAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 36898 0.67 0.612084
Target:  5'- aACCaGCUCGGACuGGCcGGUgGCAucGCCc -3'
miRNA:   3'- aUGG-CGGGUCUG-CCGaCUAgCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 7103 0.67 0.612084
Target:  5'- gGCCGCCgAGGaccgGGCca--CGCAACCg -3'
miRNA:   3'- aUGGCGGgUCUg---CCGacuaGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.