miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 4013 0.7 0.437687
Target:  5'- cGCCGCCau--CGGCUGG-CGCGucgGCCg -3'
miRNA:   3'- aUGGCGGgucuGCCGACUaGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 4419 0.66 0.633615
Target:  5'- gGCCGCCggaacaacgcgCGGGCcuGCUGG-CGCAGCUg -3'
miRNA:   3'- aUGGCGG-----------GUCUGc-CGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 4886 0.82 0.069492
Target:  5'- gGCgGCUCAGGCGGcCUGGUCGCcACCg -3'
miRNA:   3'- aUGgCGGGUCUGCC-GACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 5115 0.66 0.687248
Target:  5'- cAgCGCCUGGACcuGCUGAagGCcACCg -3'
miRNA:   3'- aUgGCGGGUCUGc-CGACUagCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 5884 0.66 0.676582
Target:  5'- cACCaGCCUGaccggguggcGGCGGCgcUGAUCGCGcacgACCg -3'
miRNA:   3'- aUGG-CGGGU----------CUGCCG--ACUAGCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 7103 0.67 0.612084
Target:  5'- gGCCGCCgAGGaccgGGCca--CGCAACCg -3'
miRNA:   3'- aUGGCGGgUCUg---CCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 7543 0.71 0.349222
Target:  5'- gGCCGCCguGGCGGCguucUGGuUCGCcuacACCg -3'
miRNA:   3'- aUGGCGGguCUGCCG----ACU-AGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 7560 0.7 0.400751
Target:  5'- gACCGgcCCCGGguggcgcugguGCGGCUGGUgCGCGGCa -3'
miRNA:   3'- aUGGC--GGGUC-----------UGCCGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 7920 0.67 0.569291
Target:  5'- gGCCGCgCAGGUGGUgGAcaUCGCcGCCg -3'
miRNA:   3'- aUGGCGgGUCUGCCGaCU--AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 7971 0.71 0.357475
Target:  5'- gGCCG-CCAGGCGGCcgugCGCAACa -3'
miRNA:   3'- aUGGCgGGUCUGCCGacuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 8172 0.68 0.548156
Target:  5'- gAUCGCCgGgGGCGcGCUGGgccaggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUa-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 8525 0.69 0.486469
Target:  5'- --aCGCCagcaAGucGCGGCUGAUCgGCAACg -3'
miRNA:   3'- augGCGGg---UC--UGCCGACUAG-CGUUGg -5'
19044 5' -57.1 NC_004684.1 + 9141 0.68 0.537681
Target:  5'- gACCGCCuCGGcGCGGCaGGUgCgGCAACUg -3'
miRNA:   3'- aUGGCGG-GUC-UGCCGaCUA-G-CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 9576 0.66 0.665876
Target:  5'- cACCGCCgGGACcaGGCcgUGGUCGgGuucCCa -3'
miRNA:   3'- aUGGCGGgUCUG--CCG--ACUAGCgUu--GG- -5'
19044 5' -57.1 NC_004684.1 + 9664 0.67 0.590621
Target:  5'- cUGCCGCCUGGGCGuGCcaccaguccuUGGccaucucguugCGCAGCCa -3'
miRNA:   3'- -AUGGCGGGUCUGC-CG----------ACUa----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10150 0.67 0.569291
Target:  5'- gUGCCGCCCgcccaggugGGGCguuuguccggcaGGCUGAgcaccaUCGCGccGCCg -3'
miRNA:   3'- -AUGGCGGG---------UCUG------------CCGACU------AGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 10561 0.66 0.633615
Target:  5'- aGCUGCgCCAGGUGGUcgUGGUCGaUGGCCa -3'
miRNA:   3'- aUGGCG-GGUCUGCCG--ACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 10579 0.66 0.670162
Target:  5'- -cCCGCCgAucCGGCUGGUucggcgcgcgaggugCGCAACUg -3'
miRNA:   3'- auGGCGGgUcuGCCGACUA---------------GCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.