miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19045 5' -53.9 NC_004684.1 + 1474 0.69 0.66812
Target:  5'- gGCcGGAcGUGCCCGGUgcGgcgGCCCu -3'
miRNA:   3'- gCGaCCUuUACGGGUCGaaCa--UGGGc -5'
19045 5' -53.9 NC_004684.1 + 7232 0.67 0.754899
Target:  5'- gCGCgUGGAGguGUGCCCGGUgcaccaggagcaaggUGcgcgACCCGg -3'
miRNA:   3'- -GCG-ACCUU--UACGGGUCGa--------------ACa---UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 9468 0.68 0.732946
Target:  5'- gCGCUGGAGcuggcgggcAaGCgCAGCc-GUACCCGg -3'
miRNA:   3'- -GCGACCUU---------UaCGgGUCGaaCAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 10213 0.73 0.444428
Target:  5'- gCGCUGGAGGUGCCU-GCccagGUGCgCGa -3'
miRNA:   3'- -GCGACCUUUACGGGuCGaa--CAUGgGC- -5'
19045 5' -53.9 NC_004684.1 + 13138 0.72 0.494794
Target:  5'- gGCUGaGGAGcUGuCCCGGCgcgGUGCCCu -3'
miRNA:   3'- gCGAC-CUUU-AC-GGGUCGaa-CAUGGGc -5'
19045 5' -53.9 NC_004684.1 + 13440 0.67 0.764144
Target:  5'- -aCUGuGcgGUGCUCAGCU-GUGCCUGg -3'
miRNA:   3'- gcGAC-CuuUACGGGUCGAaCAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 15724 0.71 0.515662
Target:  5'- gGCUGGAGGcucguggcgaguUGCCCAGCgacuggccgcGUACaCCGa -3'
miRNA:   3'- gCGACCUUU------------ACGGGUCGaa--------CAUG-GGC- -5'
19045 5' -53.9 NC_004684.1 + 21799 0.72 0.484504
Target:  5'- uGCUGGAccUGUCCGGCUcc-ACCCGc -3'
miRNA:   3'- gCGACCUuuACGGGUCGAacaUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 23160 0.67 0.764144
Target:  5'- aCGCUGGAGcagGUGCCCGaaaUGUuccgGCCCu -3'
miRNA:   3'- -GCGACCUU---UACGGGUcgaACA----UGGGc -5'
19045 5' -53.9 NC_004684.1 + 23301 0.66 0.819797
Target:  5'- aCGCUGGAccgcauuuacauGUGCgucaccaCCGGCgagcUGUACCUGg -3'
miRNA:   3'- -GCGACCUu-----------UACG-------GGUCGa---ACAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 24781 0.66 0.840543
Target:  5'- gGCgggGGAGGUGCCgGGUcgaagGUGCCg- -3'
miRNA:   3'- gCGa--CCUUUACGGgUCGaa---CAUGGgc -5'
19045 5' -53.9 NC_004684.1 + 25118 0.67 0.774286
Target:  5'- uGCUGGAu-UGCCCAGgUgucgGUcuuGCUCGc -3'
miRNA:   3'- gCGACCUuuACGGGUCgAa---CA---UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 25714 0.67 0.784281
Target:  5'- gCGCUGGGuguUGCCgAGgUcg-GCCCGg -3'
miRNA:   3'- -GCGACCUuu-ACGGgUCgAacaUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 26439 0.77 0.236324
Target:  5'- gCGCUGGAAcgGCagccgCAGCggcGUGCCCGg -3'
miRNA:   3'- -GCGACCUUuaCGg----GUCGaa-CAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 28601 1.1 0.001338
Target:  5'- cCGCUGGAAAUGCCCAGCUUGUACCCGg -3'
miRNA:   3'- -GCGACCUUUACGGGUCGAACAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 33700 0.68 0.705159
Target:  5'- cCGCUGGcgaGGGUGUCCAGCgcgguggugGUgcacagcgacgccauGCCCGg -3'
miRNA:   3'- -GCGACC---UUUACGGGUCGaa-------CA---------------UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 37389 0.73 0.40628
Target:  5'- cCGCUGGguGUGCUCGGCagcuUGCCCa -3'
miRNA:   3'- -GCGACCuuUACGGGUCGaac-AUGGGc -5'
19045 5' -53.9 NC_004684.1 + 37579 0.85 0.080351
Target:  5'- aGCUGGAGGUGCCCGGCaucgGUACCg- -3'
miRNA:   3'- gCGACCUUUACGGGUCGaa--CAUGGgc -5'
19045 5' -53.9 NC_004684.1 + 38796 0.74 0.378169
Target:  5'- aGCUGGGcauuuccagcggcGGUGCCCGcCUggcgGUGCCCGa -3'
miRNA:   3'- gCGACCU-------------UUACGGGUcGAa---CAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 40356 0.71 0.536877
Target:  5'- gGCUGGAcacAAUGCcaCCGGCacccgGUGCCUGg -3'
miRNA:   3'- gCGACCU---UUACG--GGUCGaa---CAUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.