miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19045 5' -53.9 NC_004684.1 + 37579 0.85 0.080351
Target:  5'- aGCUGGAGGUGCCCGGCaucgGUACCg- -3'
miRNA:   3'- gCGACCUUUACGGGUCGaa--CAUGGgc -5'
19045 5' -53.9 NC_004684.1 + 60727 0.66 0.822565
Target:  5'- uCGggGaGAGGUGCCCGGCgaccggGUGgCCGc -3'
miRNA:   3'- -GCgaC-CUUUACGGGUCGaa----CAUgGGC- -5'
19045 5' -53.9 NC_004684.1 + 55413 0.67 0.783288
Target:  5'- gCGCUGGcgGUGgagaccaCCCAGCagcGUGCgCCGg -3'
miRNA:   3'- -GCGACCuuUAC-------GGGUCGaa-CAUG-GGC- -5'
19045 5' -53.9 NC_004684.1 + 50278 0.67 0.778302
Target:  5'- uCGCUGGccagcgccaggcccGAcggcgacuucacgcGUGCCCAGUcgGUgcGCCCGg -3'
miRNA:   3'- -GCGACC--------------UU--------------UACGGGUCGaaCA--UGGGC- -5'
19045 5' -53.9 NC_004684.1 + 53199 0.67 0.743462
Target:  5'- cCGCUGGccagGAAUGCguCCAGg--GUGCCCa -3'
miRNA:   3'- -GCGACC----UUUACG--GGUCgaaCAUGGGc -5'
19045 5' -53.9 NC_004684.1 + 9468 0.68 0.732946
Target:  5'- gCGCUGGAGcuggcgggcAaGCgCAGCc-GUACCCGg -3'
miRNA:   3'- -GCGACCUU---------UaCGgGUCGaaCAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 57894 0.68 0.689982
Target:  5'- gGCUGGug--GCCgGGCUgaagGUGgCCGg -3'
miRNA:   3'- gCGACCuuuaCGGgUCGAa---CAUgGGC- -5'
19045 5' -53.9 NC_004684.1 + 49506 0.7 0.569233
Target:  5'- gCGCgucGGggGUguagcgGCCCAGCgUGcACCCGg -3'
miRNA:   3'- -GCGa--CCuuUA------CGGGUCGaACaUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 10213 0.73 0.444428
Target:  5'- gCGCUGGAGGUGCCU-GCccagGUGCgCGa -3'
miRNA:   3'- -GCGACCUUUACGGGuCGaa--CAUGgGC- -5'
19045 5' -53.9 NC_004684.1 + 62783 0.73 0.434701
Target:  5'- gGUUGGugccUGCCCGGCgggGUugCCGg -3'
miRNA:   3'- gCGACCuuu-ACGGGUCGaa-CAugGGC- -5'
19045 5' -53.9 NC_004684.1 + 37389 0.73 0.40628
Target:  5'- cCGCUGGguGUGCUCGGCagcuUGCCCa -3'
miRNA:   3'- -GCGACCuuUACGGGUCGaac-AUGGGc -5'
19045 5' -53.9 NC_004684.1 + 38796 0.74 0.378169
Target:  5'- aGCUGGGcauuuccagcggcGGUGCCCGcCUggcgGUGCCCGa -3'
miRNA:   3'- gCGACCU-------------UUACGGGUcGAa---CAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 54007 0.75 0.32759
Target:  5'- uCGCUGGAucacguuGUGCCUccucggccuucguGGCgggUGUGCCCGc -3'
miRNA:   3'- -GCGACCUu------UACGGG-------------UCGa--ACAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 15724 0.71 0.515662
Target:  5'- gGCUGGAGGcucguggcgaguUGCCCAGCgacuggccgcGUACaCCGa -3'
miRNA:   3'- gCGACCUUU------------ACGGGUCGaa--------CAUG-GGC- -5'
19045 5' -53.9 NC_004684.1 + 13138 0.72 0.494794
Target:  5'- gGCUGaGGAGcUGuCCCGGCgcgGUGCCCu -3'
miRNA:   3'- gCGAC-CUUU-AC-GGGUCGaa-CAUGGGc -5'
19045 5' -53.9 NC_004684.1 + 21799 0.72 0.484504
Target:  5'- uGCUGGAccUGUCCGGCUcc-ACCCGc -3'
miRNA:   3'- gCGACCUuuACGGGUCGAacaUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 55890 0.72 0.464241
Target:  5'- uGCcGGGAGU-CCCAGCaggcgaUGUGCCCGa -3'
miRNA:   3'- gCGaCCUUUAcGGGUCGa-----ACAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 42938 0.72 0.454276
Target:  5'- aGCUGGAuuUGCUguuGCUUGUACuuGa -3'
miRNA:   3'- gCGACCUuuACGGgu-CGAACAUGggC- -5'
19045 5' -53.9 NC_004684.1 + 26439 0.77 0.236324
Target:  5'- gCGCUGGAAcgGCagccgCAGCggcGUGCCCGg -3'
miRNA:   3'- -GCGACCUUuaCGg----GUCGaa-CAUGGGC- -5'
19045 5' -53.9 NC_004684.1 + 53072 0.66 0.840543
Target:  5'- gCGgUGGucuUGCCaccgaccuuCAGCUUGUacugGCCCGa -3'
miRNA:   3'- -GCgACCuuuACGG---------GUCGAACA----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.