miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 3' -56.8 NC_004684.1 + 29044 0.66 0.682525
Target:  5'- uCGUUGAGCUugGGCGUGGUCaccGCc- -3'
miRNA:   3'- cGCGACUUGG--CCGCACCAGguuCGuu -5'
19046 3' -56.8 NC_004684.1 + 26736 0.66 0.682525
Target:  5'- aGCGC--GACUGGCGgGG-CCAGGCc- -3'
miRNA:   3'- -CGCGacUUGGCCGCaCCaGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 19552 0.66 0.682525
Target:  5'- cGCGCUacguGCCgucaGGCG-GGUCCGacgAGCAGg -3'
miRNA:   3'- -CGCGAcu--UGG----CCGCaCCAGGU---UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 19017 0.66 0.681448
Target:  5'- uCGCUGGucuccggguuggcACCGGCGg---CCGGGCAGg -3'
miRNA:   3'- cGCGACU-------------UGGCCGCaccaGGUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 13273 0.66 0.65005
Target:  5'- cGCGCUGGuggccGCCGGUGgcUGGugcgcgccgUCgGAGCAGc -3'
miRNA:   3'- -CGCGACU-----UGGCCGC--ACC---------AGgUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 37947 0.66 0.65005
Target:  5'- aUGUcGAACCGGuCGcccagcgGGUCCGGGCGc -3'
miRNA:   3'- cGCGaCUUGGCC-GCa------CCAGGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 47876 0.66 0.63918
Target:  5'- gGCGUUGAGCCaGuGCGUGccGUCCcacccAGCAGc -3'
miRNA:   3'- -CGCGACUUGG-C-CGCAC--CAGGu----UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 14955 0.66 0.63918
Target:  5'- uGCGCcGAGCCGaGCcaGGUCCGcuuGCGu -3'
miRNA:   3'- -CGCGaCUUGGC-CGcaCCAGGUu--CGUu -5'
19046 3' -56.8 NC_004684.1 + 47323 0.67 0.617429
Target:  5'- cCGUgucGCCGGUGUGGgcgUCGAGCAu -3'
miRNA:   3'- cGCGacuUGGCCGCACCa--GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 63916 0.67 0.617429
Target:  5'- gGUGC-GGcCCGGCGUGG-CUGAGCu- -3'
miRNA:   3'- -CGCGaCUuGGCCGCACCaGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 66259 0.67 0.606568
Target:  5'- cGUGCUcAGCgCGGCGUcGUCCcAGCGGa -3'
miRNA:   3'- -CGCGAcUUG-GCCGCAcCAGGuUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 28528 0.67 0.606568
Target:  5'- gGCGUUGAACCGcGCGUaaucGGUgUUGAGCGc -3'
miRNA:   3'- -CGCGACUUGGC-CGCA----CCA-GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 28275 0.67 0.595728
Target:  5'- uGCGCgaGGccGCUGGCGUGGUgcUCAcGCAGg -3'
miRNA:   3'- -CGCGa-CU--UGGCCGCACCA--GGUuCGUU- -5'
19046 3' -56.8 NC_004684.1 + 9467 0.67 0.595728
Target:  5'- gGCGCUgGAGCUGGCG-GG--CAAGCGc -3'
miRNA:   3'- -CGCGA-CUUGGCCGCaCCagGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 56500 0.67 0.594646
Target:  5'- cGCGCcGAcccggguggucACCGGCGUcGGugaggucgaguucUCCGAGCGu -3'
miRNA:   3'- -CGCGaCU-----------UGGCCGCA-CC-------------AGGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 45274 0.67 0.574148
Target:  5'- cGCGCUGAGCUgccaGGCGcugcUGGUUCGcGCu- -3'
miRNA:   3'- -CGCGACUUGG----CCGC----ACCAGGUuCGuu -5'
19046 3' -56.8 NC_004684.1 + 46124 0.67 0.574148
Target:  5'- cGCGCgu-GCCGGgGUGGUugaCCuGGCGc -3'
miRNA:   3'- -CGCGacuUGGCCgCACCA---GGuUCGUu -5'
19046 3' -56.8 NC_004684.1 + 21307 0.67 0.573073
Target:  5'- uGCGCUGGGCCaucaagcacgGGUuccUGGUCCAgccgcgcGGCAAg -3'
miRNA:   3'- -CGCGACUUGG----------CCGc--ACCAGGU-------UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 19674 0.67 0.573073
Target:  5'- cGCGCUcuACCGGCGcggcggcaaggccUGG-CCGAGCc- -3'
miRNA:   3'- -CGCGAcuUGGCCGC-------------ACCaGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 52251 0.67 0.563424
Target:  5'- -aGCUGcgcGCUGGCGUGGaUCAGGCc- -3'
miRNA:   3'- cgCGACu--UGGCCGCACCaGGUUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.