miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 57309 0.66 0.572173
Target:  5'- gGCUGAgCACCCGGCGCacca--CGGGg -3'
miRNA:   3'- aCGGCU-GUGGGCUGCGccacuaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 56854 0.66 0.59278
Target:  5'- cGCCGACGaugaagcuaCCGGCgaGCGGUGcgccugaccGUCGGcGg -3'
miRNA:   3'- aCGGCUGUg--------GGCUG--CGCCAC---------UAGCC-C- -5'
19047 3' -59.3 NC_004684.1 + 20064 0.66 0.59278
Target:  5'- aUGCuCGACGCCCacaccggcGACaCGGUGA-CGGc -3'
miRNA:   3'- -ACG-GCUGUGGG--------CUGcGCCACUaGCCc -5'
19047 3' -59.3 NC_004684.1 + 66167 0.66 0.581428
Target:  5'- uUGCUGGCagauccaGCCgGugGUGGUGGUgGuGGc -3'
miRNA:   3'- -ACGGCUG-------UGGgCugCGCCACUAgC-CC- -5'
19047 3' -59.3 NC_004684.1 + 31892 0.66 0.572173
Target:  5'- gGUgGACGCCgGGacguuguuCGCGGUcggcauucugccGGUCGGGg -3'
miRNA:   3'- aCGgCUGUGGgCU--------GCGCCA------------CUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 41466 0.66 0.581428
Target:  5'- gGCUGAC-CCCGGCGgugcuggccaaGGUGAUggacaacCGGGu -3'
miRNA:   3'- aCGGCUGuGGGCUGCg----------CCACUA-------GCCC- -5'
19047 3' -59.3 NC_004684.1 + 10070 0.66 0.59278
Target:  5'- uUGaCGACACCCc-CGUGGUGcgcCGGGu -3'
miRNA:   3'- -ACgGCUGUGGGcuGCGCCACua-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 39113 0.66 0.582458
Target:  5'- gUGaCCGgguACGCCUG-CGCGG-GGUCGGc -3'
miRNA:   3'- -AC-GGC---UGUGGGCuGCGCCaCUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 10671 0.66 0.59278
Target:  5'- cGaCCGGCACaCCGaACGCcucaacGGUCGGGa -3'
miRNA:   3'- aC-GGCUGUG-GGC-UGCGcca---CUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 35782 0.66 0.58968
Target:  5'- cGCCGcgcuccaucguggcGCAgucCCCGGCGaCGGUGGUCa-- -3'
miRNA:   3'- aCGGC--------------UGU---GGGCUGC-GCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 48777 0.66 0.59278
Target:  5'- uUGCCGACGCCgGGCG-GGccgaUGAUgCaGGa -3'
miRNA:   3'- -ACGGCUGUGGgCUGCgCC----ACUA-GcCC- -5'
19047 3' -59.3 NC_004684.1 + 16277 0.66 0.596917
Target:  5'- cGCCGG-GCCCGACGCGGcgcuucacugucguaUcaGAcCGGGc -3'
miRNA:   3'- aCGGCUgUGGGCUGCGCC---------------A--CUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 48945 0.66 0.582458
Target:  5'- cGCCGAacggcacguCGgCgGGCGgGGUGGcCGGGg -3'
miRNA:   3'- aCGGCU---------GUgGgCUGCgCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 28063 0.67 0.531535
Target:  5'- gGUCGGC-CCCGGCG-GuGUGGcCGGGc -3'
miRNA:   3'- aCGGCUGuGGGCUGCgC-CACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 46386 0.67 0.531535
Target:  5'- aUGCCGAUGuCgCUGGC-CGGgaUGGUCGGGu -3'
miRNA:   3'- -ACGGCUGU-G-GGCUGcGCC--ACUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 21679 0.67 0.550724
Target:  5'- gUGCCGACuuCCCGAUGUGcgacaccGUGGUCa-- -3'
miRNA:   3'- -ACGGCUGu-GGGCUGCGC-------CACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 30755 0.67 0.55174
Target:  5'- aGuCCGAUGaccacCCCGACGaGGUGGaCGGGu -3'
miRNA:   3'- aC-GGCUGU-----GGGCUGCgCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 58614 0.67 0.56091
Target:  5'- uUGaUCGACgGCCCGugGCGGcUGGUgccgcgcUGGGc -3'
miRNA:   3'- -AC-GGCUG-UGGGCugCGCC-ACUA-------GCCC- -5'
19047 3' -59.3 NC_004684.1 + 31014 0.67 0.541606
Target:  5'- gGCCuGACG-CCGAC-CGGUGAguucUGGGa -3'
miRNA:   3'- aCGG-CUGUgGGCUGcGCCACUa---GCCC- -5'
19047 3' -59.3 NC_004684.1 + 35736 0.67 0.561931
Target:  5'- cGCCGACAgugccagcguCCCGGCGgGGaUGGUguagCGcGGa -3'
miRNA:   3'- aCGGCUGU----------GGGCUGCgCC-ACUA----GC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.