miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 44602 0.66 0.612467
Target:  5'- gGuuGAacuuguuCACCgGACGCGG-GAgcgcCGGGg -3'
miRNA:   3'- aCggCU-------GUGGgCUGCGCCaCUa---GCCC- -5'
19047 3' -59.3 NC_004684.1 + 9651 0.66 0.623894
Target:  5'- -cCCGGCAUCCgGGCgGCGGUGAagcgCGcGGu -3'
miRNA:   3'- acGGCUGUGGG-CUG-CGCCACUa---GC-CC- -5'
19047 3' -59.3 NC_004684.1 + 33820 0.66 0.623894
Target:  5'- cGUCGGCgggcgguguGCCCGGCgGCGGcGGcaaCGGGg -3'
miRNA:   3'- aCGGCUG---------UGGGCUG-CGCCaCUa--GCCC- -5'
19047 3' -59.3 NC_004684.1 + 33102 0.66 0.612467
Target:  5'- cUGCCGACGCa-GGCGCucgcgcuggccaaGGUGcUCGGc -3'
miRNA:   3'- -ACGGCUGUGggCUGCG-------------CCACuAGCCc -5'
19047 3' -59.3 NC_004684.1 + 39113 0.66 0.582458
Target:  5'- gUGaCCGgguACGCCUG-CGCGG-GGUCGGc -3'
miRNA:   3'- -AC-GGC---UGUGGGCuGCGCCaCUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 66167 0.66 0.581428
Target:  5'- uUGCUGGCagauccaGCCgGugGUGGUGGUgGuGGc -3'
miRNA:   3'- -ACGGCUG-------UGGgCugCGCCACUAgC-CC- -5'
19047 3' -59.3 NC_004684.1 + 10070 0.66 0.59278
Target:  5'- uUGaCGACACCCc-CGUGGUGcgcCGGGu -3'
miRNA:   3'- -ACgGCUGUGGGcuGCGCCACua-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 62937 0.66 0.612467
Target:  5'- aGCCGACcagcgcgcggcgcGCgCCGACGaUGGUGGcgugcUCGGu -3'
miRNA:   3'- aCGGCUG-------------UG-GGCUGC-GCCACU-----AGCCc -5'
19047 3' -59.3 NC_004684.1 + 12809 0.66 0.620776
Target:  5'- cGCCGACgacgcGCCCGAggacgGCGGcucugcugccgacgUGGUCGcGGa -3'
miRNA:   3'- aCGGCUG-----UGGGCUg----CGCC--------------ACUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 10671 0.66 0.59278
Target:  5'- cGaCCGGCACaCCGaACGCcucaacGGUCGGGa -3'
miRNA:   3'- aC-GGCUGUG-GGC-UGCGcca---CUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 48945 0.66 0.582458
Target:  5'- cGCCGAacggcacguCGgCgGGCGgGGUGGcCGGGg -3'
miRNA:   3'- aCGGCU---------GUgGgCUGCgCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 41466 0.66 0.581428
Target:  5'- gGCUGAC-CCCGGCGgugcuggccaaGGUGAUggacaacCGGGu -3'
miRNA:   3'- aCGGCUGuGGGCUGCg----------CCACUA-------GCCC- -5'
19047 3' -59.3 NC_004684.1 + 24107 0.66 0.623894
Target:  5'- cGCgCGGCaucGCCaagGACGUGGUGcgCGGc -3'
miRNA:   3'- aCG-GCUG---UGGg--CUGCGCCACuaGCCc -5'
19047 3' -59.3 NC_004684.1 + 32614 0.66 0.613505
Target:  5'- gGCCG-UACCCGGUGCGGag--UGGGa -3'
miRNA:   3'- aCGGCuGUGGGCUGCGCCacuaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 64020 0.66 0.613505
Target:  5'- uUGCCG-CGCuuGACcucggugucgGCGGUG-UCGGc -3'
miRNA:   3'- -ACGGCuGUGggCUG----------CGCCACuAGCCc -5'
19047 3' -59.3 NC_004684.1 + 48777 0.66 0.59278
Target:  5'- uUGCCGACGCCgGGCG-GGccgaUGAUgCaGGa -3'
miRNA:   3'- -ACGGCUGUGGgCUGCgCC----ACUA-GcCC- -5'
19047 3' -59.3 NC_004684.1 + 4176 0.66 0.623894
Target:  5'- gGCCcgguuGCGCCCGgcggGCGCGGUGGUUc-- -3'
miRNA:   3'- aCGGc----UGUGGGC----UGCGCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 7706 0.66 0.623894
Target:  5'- gGCCGuCGCCgUGGCGCuGGccgugagccaccUGAUCGGu -3'
miRNA:   3'- aCGGCuGUGG-GCUGCG-CC------------ACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 31892 0.66 0.572173
Target:  5'- gGUgGACGCCgGGacguuguuCGCGGUcggcauucugccGGUCGGGg -3'
miRNA:   3'- aCGgCUGUGGgCU--------GCGCCA------------CUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 35782 0.66 0.58968
Target:  5'- cGCCGcgcuccaucguggcGCAgucCCCGGCGaCGGUGGUCa-- -3'
miRNA:   3'- aCGGC--------------UGU---GGGCUGC-GCCACUAGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.