miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 20 0.68 0.453853
Target:  5'- aGCCgGACACCgGGgGCGGUaccaGGGg -3'
miRNA:   3'- aCGG-CUGUGGgCUgCGCCAcuagCCC- -5'
19047 3' -59.3 NC_004684.1 + 2097 0.67 0.521532
Target:  5'- cUGgUGGCGCagcacuaCGGCGCGGcgUGGUCGGa -3'
miRNA:   3'- -ACgGCUGUGg------GCUGCGCC--ACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 2289 0.69 0.439052
Target:  5'- aGCCuGgGCCaCGACGCGGUGcugaccgccgugcacGUCGGu -3'
miRNA:   3'- aCGGcUgUGG-GCUGCGCCAC---------------UAGCCc -5'
19047 3' -59.3 NC_004684.1 + 4162 0.7 0.366168
Target:  5'- gGCCGACGCCCGGCaacgagccGCcGGUGGccgagaagaUgGGGc -3'
miRNA:   3'- aCGGCUGUGGGCUG--------CG-CCACU---------AgCCC- -5'
19047 3' -59.3 NC_004684.1 + 4176 0.66 0.623894
Target:  5'- gGCCcgguuGCGCCCGgcggGCGCGGUGGUUc-- -3'
miRNA:   3'- aCGGc----UGUGGGC----UGCGCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 4449 0.68 0.472726
Target:  5'- cGUCGGCGCgCGccGCGCGcUGGUCGGc -3'
miRNA:   3'- aCGGCUGUGgGC--UGCGCcACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 4782 0.68 0.501753
Target:  5'- cGCCagcaaGCGCCuCGGCGCGGUGGcCGa- -3'
miRNA:   3'- aCGGc----UGUGG-GCUGCGCCACUaGCcc -5'
19047 3' -59.3 NC_004684.1 + 4793 0.69 0.426331
Target:  5'- gUGCgCGACGCcaugaCCGGCGCGcaGAUCGaGGa -3'
miRNA:   3'- -ACG-GCUGUG-----GGCUGCGCcaCUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 5751 0.68 0.501753
Target:  5'- cGCCGACACCuccgggggguuCGacuggcccaaguGCGUGGUGugcgggCGGGa -3'
miRNA:   3'- aCGGCUGUGG-----------GC------------UGCGCCACua----GCCC- -5'
19047 3' -59.3 NC_004684.1 + 6073 0.66 0.582458
Target:  5'- cGCCGAgggcggcgGCCCGGCgGCGGUGcugcCGGa -3'
miRNA:   3'- aCGGCUg-------UGGGCUG-CGCCACua--GCCc -5'
19047 3' -59.3 NC_004684.1 + 7641 0.73 0.233976
Target:  5'- cGCCGugG-CgGGCGUGGUGAcCGGGu -3'
miRNA:   3'- aCGGCugUgGgCUGCGCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 7706 0.66 0.623894
Target:  5'- gGCCGuCGCCgUGGCGCuGGccgugagccaccUGAUCGGu -3'
miRNA:   3'- aCGGCuGUGG-GCUGCG-CC------------ACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 7769 0.69 0.435395
Target:  5'- gGCCGACccccaCCGugGUcgagcauuGGUGcgCGGGa -3'
miRNA:   3'- aCGGCUGug---GGCugCG--------CCACuaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 8520 0.68 0.48231
Target:  5'- cGCCaACGCCagcaaGuCGCGGcUGAUCGGc -3'
miRNA:   3'- aCGGcUGUGGg----CuGCGCC-ACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 8991 0.66 0.586583
Target:  5'- -uCCGGCGgCCGggccaaggccuccacGCGCGGUGccgugCGGGg -3'
miRNA:   3'- acGGCUGUgGGC---------------UGCGCCACua---GCCC- -5'
19047 3' -59.3 NC_004684.1 + 9579 0.66 0.603131
Target:  5'- cGCCGGgACCaGGC-C-GUGGUCGGGu -3'
miRNA:   3'- aCGGCUgUGGgCUGcGcCACUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 9651 0.66 0.623894
Target:  5'- -cCCGGCAUCCgGGCgGCGGUGAagcgCGcGGu -3'
miRNA:   3'- acGGCUGUGGG-CUG-CGCCACUa---GC-CC- -5'
19047 3' -59.3 NC_004684.1 + 9901 0.75 0.196939
Target:  5'- cGCCGACGagugguccgggcugaCCGAgGCGGUGAUUGuGGc -3'
miRNA:   3'- aCGGCUGUg--------------GGCUgCGCCACUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 10070 0.66 0.59278
Target:  5'- uUGaCGACACCCc-CGUGGUGcgcCGGGu -3'
miRNA:   3'- -ACgGCUGUGGGcuGCGCCACua-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 10671 0.66 0.59278
Target:  5'- cGaCCGGCACaCCGaACGCcucaacGGUCGGGa -3'
miRNA:   3'- aC-GGCUGUG-GGC-UGCGcca---CUAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.