miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 42177 0.69 0.399826
Target:  5'- cGCCG-CACU--GCGCGGUGAgcagUGGGc -3'
miRNA:   3'- aCGGCuGUGGgcUGCGCCACUa---GCCC- -5'
19047 3' -59.3 NC_004684.1 + 55030 0.7 0.36129
Target:  5'- aGCCGAagguggugcgcagugUGCCCaGCGCGGUGAUCa-- -3'
miRNA:   3'- aCGGCU---------------GUGGGcUGCGCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 41414 0.7 0.366168
Target:  5'- cGCgGugGcguccCCCGugGCGGUGGUgCGGcGg -3'
miRNA:   3'- aCGgCugU-----GGGCugCGCCACUA-GCC-C- -5'
19047 3' -59.3 NC_004684.1 + 10888 0.7 0.366168
Target:  5'- cGCaCGuucaCCGACGCGGUGAUCGc- -3'
miRNA:   3'- aCG-GCugugGGCUGCGCCACUAGCcc -5'
19047 3' -59.3 NC_004684.1 + 13645 0.7 0.374397
Target:  5'- cGCCGcGCACCUG-CGUGGUGucUCGuGGc -3'
miRNA:   3'- aCGGC-UGUGGGCuGCGCCACu-AGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 42401 0.7 0.374397
Target:  5'- cGCCGACcccaacGCgCCGACGCGGgccaaGGUaUGGGc -3'
miRNA:   3'- aCGGCUG------UG-GGCUGCGCCa----CUA-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 51992 0.7 0.382751
Target:  5'- gGCCaucGCGCCCuGC-CGGUaGAUCGGGg -3'
miRNA:   3'- aCGGc--UGUGGGcUGcGCCA-CUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 60957 0.69 0.399826
Target:  5'- gUGCUGuACACCuCGugGCuGGUGGcgUCGGc -3'
miRNA:   3'- -ACGGC-UGUGG-GCugCG-CCACU--AGCCc -5'
19047 3' -59.3 NC_004684.1 + 30845 0.69 0.399826
Target:  5'- aGCCGAugguCACCa-GCGCGGUGA-CGGc -3'
miRNA:   3'- aCGGCU----GUGGgcUGCGCCACUaGCCc -5'
19047 3' -59.3 NC_004684.1 + 20308 0.7 0.358064
Target:  5'- cGCCGACACCauggCGGCGgCGGccaucgaGAUCGGc -3'
miRNA:   3'- aCGGCUGUGG----GCUGC-GCCa------CUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 44540 0.71 0.334514
Target:  5'- gGCCcgGACgaACCCGGuCGgcaggcCGGUGAUCGGGu -3'
miRNA:   3'- aCGG--CUG--UGGGCU-GC------GCCACUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 27262 0.71 0.334514
Target:  5'- cUGUCGGCGuuCGGCaCGGUGAcCGGGc -3'
miRNA:   3'- -ACGGCUGUggGCUGcGCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 24031 0.76 0.155992
Target:  5'- -uCCGGCaagguGCCCGGCGCGGUGAUCa-- -3'
miRNA:   3'- acGGCUG-----UGGGCUGCGCCACUAGccc -5'
19047 3' -59.3 NC_004684.1 + 9901 0.75 0.196939
Target:  5'- cGCCGACGagugguccgggcugaCCGAgGCGGUGAUUGuGGc -3'
miRNA:   3'- aCGGCUGUg--------------GGCUgCGCCACUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 30198 0.74 0.206595
Target:  5'- gGCCaccaaACCCGGCGaguccauGGUGAUCGGGg -3'
miRNA:   3'- aCGGcug--UGGGCUGCg------CCACUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 41163 0.73 0.258023
Target:  5'- cGCCGG-ACCCGcGCGCGGggugGAaCGGGu -3'
miRNA:   3'- aCGGCUgUGGGC-UGCGCCa---CUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 53979 0.72 0.270787
Target:  5'- aUGUgaACACCCuGCGCGGUGAgUGGGg -3'
miRNA:   3'- -ACGgcUGUGGGcUGCGCCACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 38284 0.72 0.277357
Target:  5'- gGCCGugGCUCccaGCGUGGUGGUcaaCGGGu -3'
miRNA:   3'- aCGGCugUGGGc--UGCGCCACUA---GCCC- -5'
19047 3' -59.3 NC_004684.1 + 26626 0.72 0.30491
Target:  5'- cGCCaacGACACCguCGGCGCGGaGuucuUCGGGg -3'
miRNA:   3'- aCGG---CUGUGG--GCUGCGCCaCu---AGCCC- -5'
19047 3' -59.3 NC_004684.1 + 49524 0.71 0.326168
Target:  5'- gGCCcagcguGCACCCGgcgguguGCGCGGUGGccgacuUCGGGc -3'
miRNA:   3'- aCGGc-----UGUGGGC-------UGCGCCACU------AGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.