miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 25856 0.73 0.430605
Target:  5'- -cGGCgGCCUGUuCAaCGGcCUCGGCCa -3'
miRNA:   3'- guUCG-CGGACAuGUaGCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 26286 0.67 0.798965
Target:  5'- -cGGUGaCCUcGgcCAUCGGuacgcaGCUCGGCCa -3'
miRNA:   3'- guUCGC-GGA-CauGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 27541 1.13 0.000992
Target:  5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3'
miRNA:   3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 27849 0.73 0.456947
Target:  5'- cCGAGCGCgCUGUGCAcgcaggagugccggUCGcuGCUCGGCUa -3'
miRNA:   3'- -GUUCGCG-GACAUGU--------------AGCc-UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 31750 0.68 0.727803
Target:  5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3'
miRNA:   3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 32278 0.66 0.827072
Target:  5'- -cGGCGaagagGUGCAUUGGcGCUCGGCg -3'
miRNA:   3'- guUCGCgga--CAUGUAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 33500 0.68 0.727803
Target:  5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3'
miRNA:   3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 33620 0.67 0.789234
Target:  5'- -cAGCGCCggauCGUCGGGCggcuaccucgUCAGCg -3'
miRNA:   3'- guUCGCGGacauGUAGCCUG----------AGUCGg -5'
19049 3' -53.7 NC_004684.1 + 34293 0.69 0.662931
Target:  5'- gCGAGCGCCU--GCGUCGGcagcGC-CAcGCCg -3'
miRNA:   3'- -GUUCGCGGAcaUGUAGCC----UGaGU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 35424 0.68 0.752926
Target:  5'- -cAGCGCggagguggugaucggCUG-GCGUCGGAUUgCGGCCa -3'
miRNA:   3'- guUCGCG---------------GACaUGUAGCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 36290 0.67 0.769291
Target:  5'- -cAGCGCCUGcgcgGCGUCcuGC-CAGCCc -3'
miRNA:   3'- guUCGCGGACa---UGUAGccUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 36773 0.67 0.798965
Target:  5'- --cGCGCCcgGUGCcgacgcugGUCGGcggcgGCUCGGUCa -3'
miRNA:   3'- guuCGCGGa-CAUG--------UAGCC-----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 37584 0.67 0.769291
Target:  5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3'
miRNA:   3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 39673 0.72 0.480052
Target:  5'- --cGUGCCUcGUGC-UCGcGCUCGGCCg -3'
miRNA:   3'- guuCGCGGA-CAUGuAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 39806 0.66 0.853338
Target:  5'- --uGCGCCgGUccAUGUCGGacagguGCUUGGCCa -3'
miRNA:   3'- guuCGCGGaCA--UGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 39863 0.67 0.798965
Target:  5'- aCAGGCGCUUGgcgcGCAUCaG-CUCgcccaGGCCg -3'
miRNA:   3'- -GUUCGCGGACa---UGUAGcCuGAG-----UCGG- -5'
19049 3' -53.7 NC_004684.1 + 40653 0.69 0.651955
Target:  5'- uGGGgGCCUGgccccgccaGUCGcGCUCGGCCa -3'
miRNA:   3'- gUUCgCGGACaug------UAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 41266 0.66 0.817895
Target:  5'- gAGGUGCUgGUGCgGUCGGACagcGCCg -3'
miRNA:   3'- gUUCGCGGaCAUG-UAGCCUGaguCGG- -5'
19049 3' -53.7 NC_004684.1 + 43636 0.69 0.667314
Target:  5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3'
miRNA:   3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 43968 0.66 0.853338
Target:  5'- cCGAGCaucaGCC-GUGCG-CGGGCguaccCGGCCa -3'
miRNA:   3'- -GUUCG----CGGaCAUGUaGCCUGa----GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.