miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 1893 0.69 0.673878
Target:  5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3'
miRNA:   3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 2039 0.7 0.586064
Target:  5'- -cAGCGcCCUGUuCGU-GGACUaCGGCCa -3'
miRNA:   3'- guUCGC-GGACAuGUAgCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4229 0.67 0.798965
Target:  5'- gCAuGCGCCUGcGCGgcgcgcaGGAgccgcaCUCGGCCa -3'
miRNA:   3'- -GUuCGCGGACaUGUag-----CCU------GAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4892 0.66 0.844803
Target:  5'- uCAGGCgGCCUGgucgcCAcCGGcCUCGGCg -3'
miRNA:   3'- -GUUCG-CGGACau---GUaGCCuGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 6004 0.67 0.759102
Target:  5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3'
miRNA:   3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8090 0.69 0.651955
Target:  5'- gGAGCGCCcGUgaGCAagGGGCaaCGGCCu -3'
miRNA:   3'- gUUCGCGGaCA--UGUagCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8680 0.66 0.827072
Target:  5'- cCAGGUGCCUGUggccguGCGUgaGGuCUguUAGCCg -3'
miRNA:   3'- -GUUCGCGGACA------UGUAg-CCuGA--GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8874 0.74 0.384275
Target:  5'- uGAGCGCCUGc---UgGGACUCGGCUc -3'
miRNA:   3'- gUUCGCGGACauguAgCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 9464 0.66 0.827072
Target:  5'- cCGGGCGCUgGaGCuggCGGGCaagcgCAGCCg -3'
miRNA:   3'- -GUUCGCGGaCaUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 11443 0.68 0.748784
Target:  5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3'
miRNA:   3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 11633 0.68 0.748784
Target:  5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3'
miRNA:   3'- guUC-GCGGACauGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 13063 0.66 0.844803
Target:  5'- --cGCG-CUGUGCuaugcccUCGGAaugUCAGCCg -3'
miRNA:   3'- guuCGCgGACAUGu------AGCCUg--AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 15738 0.66 0.827072
Target:  5'- gCAAGgGCCUcGUGCA-CGGcCagCAGCUg -3'
miRNA:   3'- -GUUCgCGGA-CAUGUaGCCuGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 16458 0.69 0.651955
Target:  5'- --uGCGCCUGgACGaggcCGGGCUgucCGGCCa -3'
miRNA:   3'- guuCGCGGACaUGUa---GCCUGA---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 20478 0.73 0.450034
Target:  5'- cCAAGCGCa---ACGUCGGACUCGacaccaucacGCCg -3'
miRNA:   3'- -GUUCGCGgacaUGUAGCCUGAGU----------CGG- -5'
19049 3' -53.7 NC_004684.1 + 20739 0.66 0.836045
Target:  5'- gGAGCGCCUGgagGCAccgCaGGCgguGCCg -3'
miRNA:   3'- gUUCGCGGACa--UGUa--GcCUGaguCGG- -5'
19049 3' -53.7 NC_004684.1 + 21058 0.67 0.769291
Target:  5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3'
miRNA:   3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5'
19049 3' -53.7 NC_004684.1 + 21097 0.71 0.553514
Target:  5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 23254 0.67 0.788251
Target:  5'- gCGAGCGCCUgGUGCucaacgacgCGGGCgaggagcgcguggUCGGCa -3'
miRNA:   3'- -GUUCGCGGA-CAUGua-------GCCUG-------------AGUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.