miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 27541 1.13 0.000992
Target:  5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3'
miRNA:   3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8874 0.74 0.384275
Target:  5'- uGAGCGCCUGc---UgGGACUCGGCUc -3'
miRNA:   3'- gUUCGCGGACauguAgCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 25856 0.73 0.430605
Target:  5'- -cGGCgGCCUGUuCAaCGGcCUCGGCCa -3'
miRNA:   3'- guUCG-CGGACAuGUaGCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 20478 0.73 0.450034
Target:  5'- cCAAGCGCa---ACGUCGGACUCGacaccaucacGCCg -3'
miRNA:   3'- -GUUCGCGgacaUGUAGCCUGAGU----------CGG- -5'
19049 3' -53.7 NC_004684.1 + 27849 0.73 0.456947
Target:  5'- cCGAGCGCgCUGUGCAcgcaggagugccggUCGcuGCUCGGCUa -3'
miRNA:   3'- -GUUCGCG-GACAUGU--------------AGCc-UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 66646 0.72 0.469935
Target:  5'- gGAGCGCCgccaggGCGUCGGugUC-GUCg -3'
miRNA:   3'- gUUCGCGGaca---UGUAGCCugAGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 58778 0.72 0.480052
Target:  5'- -cGGUGCCgGUGCAcCGGGCUUguucgaGGCCa -3'
miRNA:   3'- guUCGCGGaCAUGUaGCCUGAG------UCGG- -5'
19049 3' -53.7 NC_004684.1 + 39673 0.72 0.480052
Target:  5'- --cGUGCCUcGUGC-UCGcGCUCGGCCg -3'
miRNA:   3'- guuCGCGGA-CAUGuAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 51115 0.72 0.490275
Target:  5'- gAAGCGCC---GCGUCGGGCcCGGCg -3'
miRNA:   3'- gUUCGCGGacaUGUAGCCUGaGUCGg -5'
19049 3' -53.7 NC_004684.1 + 64012 0.72 0.499561
Target:  5'- cCAGGCGCUUGccGCGcuugaccUCGGugUCGGCg -3'
miRNA:   3'- -GUUCGCGGACa-UGU-------AGCCugAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 57190 0.71 0.553514
Target:  5'- gCAGGCggGCCUGgaagGCggCGGcgcgaugguGCUCAGCCu -3'
miRNA:   3'- -GUUCG--CGGACa---UGuaGCC---------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 21097 0.71 0.553514
Target:  5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 2039 0.7 0.586064
Target:  5'- -cAGCGcCCUGUuCGU-GGACUaCGGCCa -3'
miRNA:   3'- guUCGC-GGACAuGUAgCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 60822 0.7 0.586064
Target:  5'- cCAGGUGCCgg-ACA-CGGACUCA-CCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCCUGAGUcGG- -5'
19049 3' -53.7 NC_004684.1 + 64943 0.7 0.618959
Target:  5'- uGAGCGCCUGg----CGGGCggUGGCCc -3'
miRNA:   3'- gUUCGCGGACauguaGCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54844 0.7 0.640961
Target:  5'- gCGAGCGCCUGgagcgcgucgAUGUCGGugggCAGCUc -3'
miRNA:   3'- -GUUCGCGGACa---------UGUAGCCuga-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8090 0.69 0.651955
Target:  5'- gGAGCGCCcGUgaGCAagGGGCaaCGGCCu -3'
miRNA:   3'- gUUCGCGGaCA--UGUagCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 16458 0.69 0.651955
Target:  5'- --uGCGCCUGgACGaggcCGGGCUgucCGGCCa -3'
miRNA:   3'- guuCGCGGACaUGUa---GCCUGA---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 40653 0.69 0.651955
Target:  5'- uGGGgGCCUGgccccgccaGUCGcGCUCGGCCa -3'
miRNA:   3'- gUUCgCGGACaug------UAGCcUGAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.