miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 11633 0.68 0.748784
Target:  5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3'
miRNA:   3'- guUC-GCGGACauGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 43636 0.69 0.667314
Target:  5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3'
miRNA:   3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 1893 0.69 0.673878
Target:  5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3'
miRNA:   3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 44626 0.68 0.70644
Target:  5'- gGAGCGCCgggGggag-CGGguACUCGGCCc -3'
miRNA:   3'- gUUCGCGGa--CauguaGCC--UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 53549 0.68 0.70644
Target:  5'- --cGUGCCUGgauuUCGGACUCccagAGCUg -3'
miRNA:   3'- guuCGCGGACauguAGCCUGAG----UCGG- -5'
19049 3' -53.7 NC_004684.1 + 46353 0.68 0.70644
Target:  5'- gGAGCGUg-GUGguCGUCGuGCUCGGCCa -3'
miRNA:   3'- gUUCGCGgaCAU--GUAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 31750 0.68 0.727803
Target:  5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3'
miRNA:   3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 33500 0.68 0.727803
Target:  5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3'
miRNA:   3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 47824 0.68 0.738347
Target:  5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3'
miRNA:   3'- guuCGCGGACauGUAGCCUGaGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 40653 0.69 0.651955
Target:  5'- uGGGgGCCUGgccccgccaGUCGcGCUCGGCCa -3'
miRNA:   3'- gUUCgCGGACaug------UAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 64943 0.7 0.618959
Target:  5'- uGAGCGCCUGg----CGGGCggUGGCCc -3'
miRNA:   3'- gUUCGCGGACauguaGCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 25856 0.73 0.430605
Target:  5'- -cGGCgGCCUGUuCAaCGGcCUCGGCCa -3'
miRNA:   3'- guUCG-CGGACAuGUaGCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 20478 0.73 0.450034
Target:  5'- cCAAGCGCa---ACGUCGGACUCGacaccaucacGCCg -3'
miRNA:   3'- -GUUCGCGgacaUGUAGCCUGAGU----------CGG- -5'
19049 3' -53.7 NC_004684.1 + 27849 0.73 0.456947
Target:  5'- cCGAGCGCgCUGUGCAcgcaggagugccggUCGcuGCUCGGCUa -3'
miRNA:   3'- -GUUCGCG-GACAUGU--------------AGCc-UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 39673 0.72 0.480052
Target:  5'- --cGUGCCUcGUGC-UCGcGCUCGGCCg -3'
miRNA:   3'- guuCGCGGA-CAUGuAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 64012 0.72 0.499561
Target:  5'- cCAGGCGCUUGccGCGcuugaccUCGGugUCGGCg -3'
miRNA:   3'- -GUUCGCGGACa-UGU-------AGCCugAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 57190 0.71 0.553514
Target:  5'- gCAGGCggGCCUGgaagGCggCGGcgcgaugguGCUCAGCCu -3'
miRNA:   3'- -GUUCG--CGGACa---UGuaGCC---------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 2039 0.7 0.586064
Target:  5'- -cAGCGcCCUGUuCGU-GGACUaCGGCCa -3'
miRNA:   3'- guUCGC-GGACAuGUAgCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 60822 0.7 0.586064
Target:  5'- cCAGGUGCCgg-ACA-CGGACUCA-CCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCCUGAGUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.