Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 22057 | 0.66 | 0.604026 |
Target: 5'- -aGcGCCAGGCACaguCUG-GCUACcgGGAc -3' miRNA: 3'- uaC-CGGUUCGUG---GACaCGGUGuaCCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 22162 | 0.72 | 0.291617 |
Target: 5'- -gGGCCugaccAGCACCaagcGCCGCAUGGAc -3' miRNA: 3'- uaCCGGu----UCGUGGaca-CGGUGUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 23100 | 0.69 | 0.436552 |
Target: 5'- -aGGCCGAGCAguccggcgaUCUG-GCCAaGUGGAu -3' miRNA: 3'- uaCCGGUUCGU---------GGACaCGGUgUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 25195 | 0.66 | 0.637055 |
Target: 5'- uUGGCCAGGCGCUggcaCCGgGUGGc -3' miRNA: 3'- uACCGGUUCGUGGacacGGUgUACCu -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 25350 | 0.68 | 0.496728 |
Target: 5'- gGUGGCCuuGGCGgCg--GCCugAUGGAc -3' miRNA: 3'- -UACCGGu-UCGUgGacaCGGugUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 27022 | 0.69 | 0.436552 |
Target: 5'- --aGCCAGGCACCggGUGCCG-GUGGc -3' miRNA: 3'- uacCGGUUCGUGGa-CACGGUgUACCu -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 27575 | 0.87 | 0.02589 |
Target: 5'- uAUGGCCAAGCACCUGU-CCgACAUGGAc -3' miRNA: 3'- -UACCGGUUCGUGGACAcGG-UGUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 27629 | 0.66 | 0.626037 |
Target: 5'- -cGGCCAGGaCGCCa-UGCCACccGGu -3' miRNA: 3'- uaCCGGUUC-GUGGacACGGUGuaCCu -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 27842 | 0.7 | 0.389751 |
Target: 5'- cUGGgcaCCGAGCGCgCUGUGCaCGCA-GGAg -3' miRNA: 3'- uACC---GGUUCGUG-GACACG-GUGUaCCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 29763 | 0.67 | 0.582111 |
Target: 5'- cAUGGCCAGcGCACCgacggcGUuCgGCAUGGGc -3' miRNA: 3'- -UACCGGUU-CGUGGa-----CAcGgUGUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 34284 | 0.68 | 0.517615 |
Target: 5'- uUGGCCAgcgcgAGCGCCUGcgucggcagcGCCACGccGGAc -3' miRNA: 3'- uACCGGU-----UCGUGGACa---------CGGUGUa-CCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 34440 | 0.7 | 0.408077 |
Target: 5'- uUGGCCAgcgcgAGCGCCUggaGUGCCucaaggguCAUGGu -3' miRNA: 3'- uACCGGU-----UCGUGGA---CACGGu-------GUACCu -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 35170 | 0.7 | 0.408077 |
Target: 5'- gGUGGCCGAGCcggaACCgggUGUGCa--GUGGAa -3' miRNA: 3'- -UACCGGUUCG----UGG---ACACGgugUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 36230 | 0.67 | 0.582111 |
Target: 5'- cUGGCCcAGCACC---GCCGCcgGGu -3' miRNA: 3'- uACCGGuUCGUGGacaCGGUGuaCCu -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 36317 | 0.67 | 0.560362 |
Target: 5'- gGUGGaCCAAcaacuCGCCgGUGCCGCAgUGGGu -3' miRNA: 3'- -UACC-GGUUc----GUGGaCACGGUGU-ACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 36910 | 0.66 | 0.626037 |
Target: 5'- cUGGCCGguGGCAUCgcccgGUcgagGCCGgGUGGAc -3' miRNA: 3'- uACCGGU--UCGUGGa----CA----CGGUgUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 37659 | 0.69 | 0.446295 |
Target: 5'- -cGGUCAGGCAUCgacccgGUgcGCCAgGUGGAu -3' miRNA: 3'- uaCCGGUUCGUGGa-----CA--CGGUgUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 37732 | 0.74 | 0.225496 |
Target: 5'- -aGGUgGAGCGCCUGcucguugGCCAgAUGGAa -3' miRNA: 3'- uaCCGgUUCGUGGACa------CGGUgUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 39145 | 0.66 | 0.626037 |
Target: 5'- cUGGCCGGGUccaccGCgCUGUGCUccGgGUGGGc -3' miRNA: 3'- uACCGGUUCG-----UG-GACACGG--UgUACCU- -5' |
|||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 41791 | 0.67 | 0.54957 |
Target: 5'- -cGGCCAGGUGCCgacGCCGacguucuuCGUGGAc -3' miRNA: 3'- uaCCGGUUCGUGGacaCGGU--------GUACCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home