miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 5' -56.7 NC_004684.1 + 283 0.66 0.626037
Target:  5'- cAUGGCC-AGUACaaaccgauCUGUGCCAaCAUcGGGa -3'
miRNA:   3'- -UACCGGuUCGUG--------GACACGGU-GUA-CCU- -5'
19049 5' -56.7 NC_004684.1 + 366 0.69 0.436552
Target:  5'- gGUGGCCAGGcCAUCgugGUGCCGguCA-GGAu -3'
miRNA:   3'- -UACCGGUUC-GUGGa--CACGGU--GUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 795 0.68 0.496728
Target:  5'- gAUGGCCcucaccuGCACCUcgccGUGgcggcCCGCAUGGAc -3'
miRNA:   3'- -UACCGGuu-----CGUGGA----CAC-----GGUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 3389 0.66 0.602927
Target:  5'- -cGG-CAAGCGCCUGgagaccGCCGCcaaggugAUGGAg -3'
miRNA:   3'- uaCCgGUUCGUGGACa-----CGGUG-------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 4114 0.66 0.615024
Target:  5'- -aGGCCAacuGGCcaaGCCUGUaCCugAUGGu -3'
miRNA:   3'- uaCCGGU---UCG---UGGACAcGGugUACCu -5'
19049 5' -56.7 NC_004684.1 + 4999 0.67 0.538845
Target:  5'- -aGGgCAAGgGCCcgGUGCCGCuccugAUGGAc -3'
miRNA:   3'- uaCCgGUUCgUGGa-CACGGUG-----UACCU- -5'
19049 5' -56.7 NC_004684.1 + 6799 0.7 0.398847
Target:  5'- -cGGCCugcGCACCgUGcGCgGCGUGGAg -3'
miRNA:   3'- uaCCGGuu-CGUGG-ACaCGgUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 8677 0.74 0.213903
Target:  5'- -cGGCCAGGUGCCUGUGgCCguGCGUGaGGu -3'
miRNA:   3'- uaCCGGUUCGUGGACAC-GG--UGUAC-CU- -5'
19049 5' -56.7 NC_004684.1 + 9893 0.67 0.560363
Target:  5'- -cGGCgCAGGCACCUgcGUGCgGCgcuugucgacgGUGGGc -3'
miRNA:   3'- uaCCG-GUUCGUGGA--CACGgUG-----------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 9937 0.67 0.537776
Target:  5'- uGUGGCCGGGCugaccauGCuCUGggucGCCACGgucaUGGAg -3'
miRNA:   3'- -UACCGGUUCG-------UG-GACa---CGGUGU----ACCU- -5'
19049 5' -56.7 NC_004684.1 + 10127 0.7 0.379904
Target:  5'- -aGGCCGAGCugugcggGCCgacgGUGCCGCccgcccagGUGGGg -3'
miRNA:   3'- uaCCGGUUCG-------UGGa---CACGGUG--------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 12490 0.66 0.637056
Target:  5'- -cGGCCAccagGGcCGCCUcGUGCCGCAc--- -3'
miRNA:   3'- uaCCGGU----UC-GUGGA-CACGGUGUaccu -5'
19049 5' -56.7 NC_004684.1 + 12982 0.67 0.54957
Target:  5'- -aGGCaacacCGAGCGCCgg-GCCGgGUGGAu -3'
miRNA:   3'- uaCCG-----GUUCGUGGacaCGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 13250 0.68 0.506082
Target:  5'- cGUGGCCAggccgugaccgccAGCGCgCUGgugGCCGCcgGUGGc -3'
miRNA:   3'- -UACCGGU-------------UCGUG-GACa--CGGUG--UACCu -5'
19049 5' -56.7 NC_004684.1 + 14148 0.7 0.41744
Target:  5'- -cGcGCCGGGauCACCUacccGUGCCACGUGGu -3'
miRNA:   3'- uaC-CGGUUC--GUGGA----CACGGUGUACCu -5'
19049 5' -56.7 NC_004684.1 + 15682 0.66 0.626037
Target:  5'- cGUGGCCAgcggcGGCACCgacGCCACcgGc- -3'
miRNA:   3'- -UACCGGU-----UCGUGGacaCGGUGuaCcu -5'
19049 5' -56.7 NC_004684.1 + 15877 0.69 0.456158
Target:  5'- cGUGGCCGccAGCGgcCCUGUgcaGCCGCA-GGGc -3'
miRNA:   3'- -UACCGGU--UCGU--GGACA---CGGUGUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 16222 0.66 0.604026
Target:  5'- cAUGGCCcGGCGCaucgGCCACAccgaGGAg -3'
miRNA:   3'- -UACCGGuUCGUGgacaCGGUGUa---CCU- -5'
19049 5' -56.7 NC_004684.1 + 16470 0.67 0.571212
Target:  5'- -aGGCCGGGCuguCCg--GCCACGUGc- -3'
miRNA:   3'- uaCCGGUUCGu--GGacaCGGUGUACcu -5'
19049 5' -56.7 NC_004684.1 + 19701 0.69 0.436552
Target:  5'- cUGGCCGAGCcaagACCUGggacgGCCACucgGuGAg -3'
miRNA:   3'- uACCGGUUCG----UGGACa----CGGUGua-C-CU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.