miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 5' -56.7 NC_004684.1 + 27575 0.87 0.02589
Target:  5'- uAUGGCCAAGCACCUGU-CCgACAUGGAc -3'
miRNA:   3'- -UACCGGUUCGUGGACAcGG-UGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 58719 0.76 0.154654
Target:  5'- -cGGCCAcaGGCACCUG-GCCGCAccGGGc -3'
miRNA:   3'- uaCCGGU--UCGUGGACaCGGUGUa-CCU- -5'
19049 5' -56.7 NC_004684.1 + 8677 0.74 0.213903
Target:  5'- -cGGCCAGGUGCCUGUGgCCguGCGUGaGGu -3'
miRNA:   3'- uaCCGGUUCGUGGACAC-GG--UGUAC-CU- -5'
19049 5' -56.7 NC_004684.1 + 37732 0.74 0.225496
Target:  5'- -aGGUgGAGCGCCUGcucguugGCCAgAUGGAa -3'
miRNA:   3'- uaCCGgUUCGUGGACa------CGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 60705 0.73 0.277273
Target:  5'- gGUGGCCAGGUcgACCUGUgcagGCCACucccGUGGc -3'
miRNA:   3'- -UACCGGUUCG--UGGACA----CGGUG----UACCu -5'
19049 5' -56.7 NC_004684.1 + 22162 0.72 0.291617
Target:  5'- -gGGCCugaccAGCACCaagcGCCGCAUGGAc -3'
miRNA:   3'- uaCCGGu----UCGUGGaca-CGGUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 53409 0.72 0.314211
Target:  5'- gGUGGCCGGGCugGCCUGcGCCGCGc--- -3'
miRNA:   3'- -UACCGGUUCG--UGGACaCGGUGUaccu -5'
19049 5' -56.7 NC_004684.1 + 61081 0.71 0.329996
Target:  5'- -cGGCCAAGUACg---GCCugGUGGAc -3'
miRNA:   3'- uaCCGGUUCGUGgacaCGGugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 48447 0.71 0.346357
Target:  5'- cUGGCCAuccuGCGCC---GCUACAUGGAc -3'
miRNA:   3'- uACCGGUu---CGUGGacaCGGUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 10127 0.7 0.379904
Target:  5'- -aGGCCGAGCugugcggGCCgacgGUGCCGCccgcccagGUGGGg -3'
miRNA:   3'- uaCCGGUUCG-------UGGa---CACGGUG--------UACCU- -5'
19049 5' -56.7 NC_004684.1 + 27842 0.7 0.389751
Target:  5'- cUGGgcaCCGAGCGCgCUGUGCaCGCA-GGAg -3'
miRNA:   3'- uACC---GGUUCGUG-GACACG-GUGUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 6799 0.7 0.398847
Target:  5'- -cGGCCugcGCACCgUGcGCgGCGUGGAg -3'
miRNA:   3'- uaCCGGuu-CGUGG-ACaCGgUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 34440 0.7 0.408077
Target:  5'- uUGGCCAgcgcgAGCGCCUggaGUGCCucaaggguCAUGGu -3'
miRNA:   3'- uACCGGU-----UCGUGGA---CACGGu-------GUACCu -5'
19049 5' -56.7 NC_004684.1 + 35170 0.7 0.408077
Target:  5'- gGUGGCCGAGCcggaACCgggUGUGCa--GUGGAa -3'
miRNA:   3'- -UACCGGUUCG----UGG---ACACGgugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 51170 0.7 0.41744
Target:  5'- uGUGGCCGAuGCGCCgg-GCCA--UGGAc -3'
miRNA:   3'- -UACCGGUU-CGUGGacaCGGUguACCU- -5'
19049 5' -56.7 NC_004684.1 + 14148 0.7 0.41744
Target:  5'- -cGcGCCGGGauCACCUacccGUGCCACGUGGu -3'
miRNA:   3'- uaC-CGGUUC--GUGGA----CACGGUGUACCu -5'
19049 5' -56.7 NC_004684.1 + 366 0.69 0.436552
Target:  5'- gGUGGCCAGGcCAUCgugGUGCCGguCA-GGAu -3'
miRNA:   3'- -UACCGGUUC-GUGGa--CACGGU--GUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 27022 0.69 0.436552
Target:  5'- --aGCCAGGCACCggGUGCCG-GUGGc -3'
miRNA:   3'- uacCGGUUCGUGGa-CACGGUgUACCu -5'
19049 5' -56.7 NC_004684.1 + 19701 0.69 0.436552
Target:  5'- cUGGCCGAGCcaagACCUGggacgGCCACucgGuGAg -3'
miRNA:   3'- uACCGGUUCG----UGGACa----CGGUGua-C-CU- -5'
19049 5' -56.7 NC_004684.1 + 23100 0.69 0.436552
Target:  5'- -aGGCCGAGCAguccggcgaUCUG-GCCAaGUGGAu -3'
miRNA:   3'- uaCCGGUUCGU---------GGACaCGGUgUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.