miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 5' -56.7 NC_004684.1 + 22057 0.66 0.604026
Target:  5'- -aGcGCCAGGCACaguCUG-GCUACcgGGAc -3'
miRNA:   3'- uaC-CGGUUCGUG---GACaCGGUGuaCCU- -5'
19049 5' -56.7 NC_004684.1 + 25350 0.68 0.496728
Target:  5'- gGUGGCCuuGGCGgCg--GCCugAUGGAc -3'
miRNA:   3'- -UACCGGu-UCGUgGacaCGGugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 13250 0.68 0.506082
Target:  5'- cGUGGCCAggccgugaccgccAGCGCgCUGgugGCCGCcgGUGGc -3'
miRNA:   3'- -UACCGGU-------------UCGUG-GACa--CGGUG--UACCu -5'
19049 5' -56.7 NC_004684.1 + 45693 0.68 0.507126
Target:  5'- -aGGCCGAGCcaugACCacgGUGUCGCAcaucgGGAa -3'
miRNA:   3'- uaCCGGUUCG----UGGa--CACGGUGUa----CCU- -5'
19049 5' -56.7 NC_004684.1 + 9937 0.67 0.537776
Target:  5'- uGUGGCCGGGCugaccauGCuCUGggucGCCACGgucaUGGAg -3'
miRNA:   3'- -UACCGGUUCG-------UG-GACa---CGGUGU----ACCU- -5'
19049 5' -56.7 NC_004684.1 + 12982 0.67 0.54957
Target:  5'- -aGGCaacacCGAGCGCCgg-GCCGgGUGGAu -3'
miRNA:   3'- uaCCG-----GUUCGUGGacaCGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 41791 0.67 0.54957
Target:  5'- -cGGCCAGGUGCCgacGCCGacguucuuCGUGGAc -3'
miRNA:   3'- uaCCGGUUCGUGGacaCGGU--------GUACCU- -5'
19049 5' -56.7 NC_004684.1 + 65327 0.67 0.54957
Target:  5'- -cGGCC-AGCGCCaGgcagGCCACgAUGGc -3'
miRNA:   3'- uaCCGGuUCGUGGaCa---CGGUG-UACCu -5'
19049 5' -56.7 NC_004684.1 + 36317 0.67 0.560362
Target:  5'- gGUGGaCCAAcaacuCGCCgGUGCCGCAgUGGGu -3'
miRNA:   3'- -UACC-GGUUc----GUGGaCACGGUGU-ACCU- -5'
19049 5' -56.7 NC_004684.1 + 795 0.68 0.496728
Target:  5'- gAUGGCCcucaccuGCACCUcgccGUGgcggcCCGCAUGGAc -3'
miRNA:   3'- -UACCGGuu-----CGUGGA----CAC-----GGUGUACCU- -5'
19049 5' -56.7 NC_004684.1 + 58622 0.69 0.456158
Target:  5'- -cGGCCcguGGCGgCUgGUGCCGCGcUGGGc -3'
miRNA:   3'- uaCCGGu--UCGUgGA-CACGGUGU-ACCU- -5'
19049 5' -56.7 NC_004684.1 + 15877 0.69 0.456158
Target:  5'- cGUGGCCGccAGCGgcCCUGUgcaGCCGCA-GGGc -3'
miRNA:   3'- -UACCGGU--UCGU--GGACA---CGGUGUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 37732 0.74 0.225496
Target:  5'- -aGGUgGAGCGCCUGcucguugGCCAgAUGGAa -3'
miRNA:   3'- uaCCGgUUCGUGGACa------CGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 27842 0.7 0.389751
Target:  5'- cUGGgcaCCGAGCGCgCUGUGCaCGCA-GGAg -3'
miRNA:   3'- uACC---GGUUCGUG-GACACG-GUGUaCCU- -5'
19049 5' -56.7 NC_004684.1 + 35170 0.7 0.408077
Target:  5'- gGUGGCCGAGCcggaACCgggUGUGCa--GUGGAa -3'
miRNA:   3'- -UACCGGUUCG----UGG---ACACGgugUACCU- -5'
19049 5' -56.7 NC_004684.1 + 51170 0.7 0.41744
Target:  5'- uGUGGCCGAuGCGCCgg-GCCA--UGGAc -3'
miRNA:   3'- -UACCGGUU-CGUGGacaCGGUguACCU- -5'
19049 5' -56.7 NC_004684.1 + 23100 0.69 0.436552
Target:  5'- -aGGCCGAGCAguccggcgaUCUG-GCCAaGUGGAu -3'
miRNA:   3'- uaCCGGUUCGU---------GGACaCGGUgUACCU- -5'
19049 5' -56.7 NC_004684.1 + 19701 0.69 0.436552
Target:  5'- cUGGCCGAGCcaagACCUGggacgGCCACucgGuGAg -3'
miRNA:   3'- uACCGGUUCG----UGGACa----CGGUGua-C-CU- -5'
19049 5' -56.7 NC_004684.1 + 27022 0.69 0.436552
Target:  5'- --aGCCAGGCACCggGUGCCG-GUGGc -3'
miRNA:   3'- uacCGGUUCGUGGa-CACGGUgUACCu -5'
19049 5' -56.7 NC_004684.1 + 37659 0.69 0.446295
Target:  5'- -cGGUCAGGCAUCgacccgGUgcGCCAgGUGGAu -3'
miRNA:   3'- uaCCGGUUCGUGGa-----CA--CGGUgUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.