miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 17851 0.66 0.298433
Target:  5'- aGGUGuGCgucACCGaCCGCA-CGCCGCCu- -3'
miRNA:   3'- gCCGC-CG---UGGC-GGCGUgGUGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 40176 0.66 0.298433
Target:  5'- uGGCGGCGaagcucaugCGCUGC-UCGCUGUCGCu -3'
miRNA:   3'- gCCGCCGUg--------GCGGCGuGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 11146 0.66 0.284907
Target:  5'- aGGUGGUcgcGCCGUCGguggACCugGCCGCCAg -3'
miRNA:   3'- gCCGCCG---UGGCGGCg---UGG--UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 40481 0.66 0.319645
Target:  5'- uCGGCGGuCugCGCCgagugcgccaGCACCugguugaCGCgCACg -3'
miRNA:   3'- -GCCGCC-GugGCGG----------CGUGGug-----GCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 37591 0.66 0.284907
Target:  5'- cCGGCaucGGUACCGUgCGgGCCcgGCCGCC-Ca -3'
miRNA:   3'- -GCCG---CCGUGGCG-GCgUGG--UGGCGGuG- -5'
19053 3' -65.2 NC_004684.1 + 59828 0.66 0.284907
Target:  5'- gGcGCGGUGCCGgUGUaggcgaACCagaacGCCGCCACg -3'
miRNA:   3'- gC-CGCCGUGGCgGCG------UGG-----UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 34480 0.66 0.30538
Target:  5'- aGGUccGGCACCGCCGaggaCACCcCCGa -3'
miRNA:   3'- gCCG--CCGUGGCGGCgug-GUGGcGGUg -5'
19053 3' -65.2 NC_004684.1 + 11911 0.66 0.298433
Target:  5'- uGcGCGGCACCaCCGacaGCCaggGCCGuCCGCn -3'
miRNA:   3'- gC-CGCCGUGGcGGCg--UGG---UGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 10331 0.66 0.291609
Target:  5'- aGGUGGUGCCugccaCCGCGCUgguGCCGUgGCc -3'
miRNA:   3'- gCCGCCGUGGc----GGCGUGG---UGGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 41323 0.66 0.284243
Target:  5'- gGGCuacGGCACCgcgaccgccgacgGCCGgGCCAagGCCACc -3'
miRNA:   3'- gCCG---CCGUGG-------------CGGCgUGGUggCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 14801 0.66 0.319645
Target:  5'- aCGGCGGCG-CGCUGU-CCACCGg--- -3'
miRNA:   3'- -GCCGCCGUgGCGGCGuGGUGGCggug -5'
19053 3' -65.2 NC_004684.1 + 24718 0.66 0.291609
Target:  5'- uGGuUGGcCACCGCCGUgaugcccuCCACCGCg-- -3'
miRNA:   3'- gCC-GCC-GUGGCGGCGu-------GGUGGCGgug -5'
19053 3' -65.2 NC_004684.1 + 5684 0.66 0.30538
Target:  5'- cCGGUGGCAUccugaCGCCgguggagcagcGCGCCcuCgCGCCGCa -3'
miRNA:   3'- -GCCGCCGUG-----GCGG-----------CGUGGu-G-GCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 33263 0.66 0.287573
Target:  5'- aGGCGGCgaggaacgugACCGCCacgcgugcagucugcGCACuCGcguuguucgcgcCCGCCGCg -3'
miRNA:   3'- gCCGCCG----------UGGCGG---------------CGUG-GU------------GGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 19688 0.66 0.312451
Target:  5'- gCGGCGGCaagGCCugGCCGaGCCaagaccugggACgGCCACu -3'
miRNA:   3'- -GCCGCCG---UGG--CGGCgUGG----------UGgCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 19794 0.66 0.291609
Target:  5'- aCGGCGGUguGCgGCCuaCAUCGCCGagCACa -3'
miRNA:   3'- -GCCGCCG--UGgCGGc-GUGGUGGCg-GUG- -5'
19053 3' -65.2 NC_004684.1 + 20453 0.66 0.284907
Target:  5'- aCGGCGGCGaagaUGCUGCG-CACCcCCAa -3'
miRNA:   3'- -GCCGCCGUg---GCGGCGUgGUGGcGGUg -5'
19053 3' -65.2 NC_004684.1 + 3267 0.66 0.284907
Target:  5'- uGGcCGGaCAUCGUggaCGCACUGCUGCCGg -3'
miRNA:   3'- gCC-GCC-GUGGCG---GCGUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 47595 0.66 0.319645
Target:  5'- uCGGCGauGUagGCCGCa-CACCGCCGUCGg -3'
miRNA:   3'- -GCCGC--CG--UGGCGgcGUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 19364 0.66 0.291609
Target:  5'- -aGCGGCGCaacaugGCCGaggaCACCGCUGUCAUg -3'
miRNA:   3'- gcCGCCGUGg-----CGGC----GUGGUGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.