miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 3267 0.66 0.284907
Target:  5'- uGGcCGGaCAUCGUggaCGCACUGCUGCCGg -3'
miRNA:   3'- gCC-GCC-GUGGCG---GCGUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 1415 0.66 0.298433
Target:  5'- gGGCGGCugaGCCuGCGcgacCCGCUGuCCACg -3'
miRNA:   3'- gCCGCCGuggCGG-CGU----GGUGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 34480 0.66 0.30538
Target:  5'- aGGUccGGCACCGCCGaggaCACCcCCGa -3'
miRNA:   3'- gCCG--CCGUGGCGGCgug-GUGGcGGUg -5'
19053 3' -65.2 NC_004684.1 + 59828 0.66 0.284907
Target:  5'- gGcGCGGUGCCGgUGUaggcgaACCagaacGCCGCCACg -3'
miRNA:   3'- gC-CGCCGUGGCgGCG------UGG-----UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 66851 0.66 0.284907
Target:  5'- uGGCGGCcucgACCGCCuggccaGCACguCAgCGCCGg -3'
miRNA:   3'- gCCGCCG----UGGCGG------CGUG--GUgGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 11286 0.66 0.297745
Target:  5'- gCGGagcugauCGGCACCacGCUGgugGCCACCGCUGCc -3'
miRNA:   3'- -GCC-------GCCGUGG--CGGCg--UGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 40176 0.66 0.298433
Target:  5'- uGGCGGCGaagcucaugCGCUGC-UCGCUGUCGCu -3'
miRNA:   3'- gCCGCCGUg--------GCGGCGuGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 62047 0.66 0.291609
Target:  5'- gGGUgGGCA-UGUCaGC-CCACCGCCACc -3'
miRNA:   3'- gCCG-CCGUgGCGG-CGuGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 13252 0.66 0.312451
Target:  5'- uGGCcaGGCcgugACCGCCagcGCGCUggugGCCGCCGg -3'
miRNA:   3'- gCCG--CCG----UGGCGG---CGUGG----UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 11146 0.66 0.284907
Target:  5'- aGGUGGUcgcGCCGUCGguggACCugGCCGCCAg -3'
miRNA:   3'- gCCGCCG---UGGCGGCg---UGG--UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 41323 0.66 0.284243
Target:  5'- gGGCuacGGCACCgcgaccgccgacgGCCGgGCCAagGCCACc -3'
miRNA:   3'- gCCG---CCGUGG-------------CGGCgUGGUggCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 19303 0.66 0.30538
Target:  5'- gCGaGCGaGCaggaACagGCCGCAUaCGCCGCCGCc -3'
miRNA:   3'- -GC-CGC-CG----UGg-CGGCGUG-GUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 20453 0.66 0.284907
Target:  5'- aCGGCGGCGaagaUGCUGCG-CACCcCCAa -3'
miRNA:   3'- -GCCGCCGUg---GCGGCGUgGUGGcGGUg -5'
19053 3' -65.2 NC_004684.1 + 11911 0.66 0.298433
Target:  5'- uGcGCGGCACCaCCGacaGCCaggGCCGuCCGCn -3'
miRNA:   3'- gC-CGCCGUGGcGGCg--UGG---UGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 37591 0.66 0.284907
Target:  5'- cCGGCaucGGUACCGUgCGgGCCcgGCCGCC-Ca -3'
miRNA:   3'- -GCCG---CCGUGGCG-GCgUGG--UGGCGGuG- -5'
19053 3' -65.2 NC_004684.1 + 57578 0.66 0.319645
Target:  5'- aCGGUGGCcuugAgCGUCggGUGCCACCGgCGCa -3'
miRNA:   3'- -GCCGCCG----UgGCGG--CGUGGUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 54229 0.66 0.283581
Target:  5'- uCGGCcagcagcuguuccagGGCACCgcGCCGggacagcuccucagcCAgCGCCGCCACc -3'
miRNA:   3'- -GCCG---------------CCGUGG--CGGC---------------GUgGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 19364 0.66 0.291609
Target:  5'- -aGCGGCGCaacaugGCCGaggaCACCGCUGUCAUg -3'
miRNA:   3'- gcCGCCGUGg-----CGGC----GUGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 17851 0.66 0.298433
Target:  5'- aGGUGuGCgucACCGaCCGCA-CGCCGCCu- -3'
miRNA:   3'- gCCGC-CG---UGGC-GGCGUgGUGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 7279 0.66 0.30538
Target:  5'- aGGCGagaccaguuCAUCGCCGCACUGCa-CCACg -3'
miRNA:   3'- gCCGCc--------GUGGCGGCGUGGUGgcGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.