miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 25958 1.09 0.000156
Target:  5'- cCGGCGGCACCGCCGCACCACCGCCACg -3'
miRNA:   3'- -GCCGCCGUGGCGGCGUGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 61307 0.84 0.012695
Target:  5'- cCGGCaGCACCGCCGCcggGCCGCCGCCc- -3'
miRNA:   3'- -GCCGcCGUGGCGGCG---UGGUGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 45096 0.82 0.019116
Target:  5'- gGGUucGGCACCGCCGCcgcgcgggccuugGCCGCCGCCAg -3'
miRNA:   3'- gCCG--CCGUGGCGGCG-------------UGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 32514 0.82 0.02139
Target:  5'- --uCGGCACCGuCCGgGCCACCGCCACc -3'
miRNA:   3'- gccGCCGUGGC-GGCgUGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 889 0.81 0.023157
Target:  5'- aGGCGGCccgcgagGCCGCCGCcaagGCCuaGCCGCCACc -3'
miRNA:   3'- gCCGCCG-------UGGCGGCG----UGG--UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 59962 0.8 0.028895
Target:  5'- uGGCGGCGCUcguGCCGCACCcggaccuuGCCGCaCGCg -3'
miRNA:   3'- gCCGCCGUGG---CGGCGUGG--------UGGCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 51494 0.79 0.032225
Target:  5'- gCGGaUGGCACCGCCcgguCACCGCCGCCugGCg -3'
miRNA:   3'- -GCC-GCCGUGGCGGc---GUGGUGGCGG--UG- -5'
19053 3' -65.2 NC_004684.1 + 46071 0.78 0.036921
Target:  5'- gCGGCGGUcgCGCCGgACCACCGCCuCg -3'
miRNA:   3'- -GCCGCCGugGCGGCgUGGUGGCGGuG- -5'
19053 3' -65.2 NC_004684.1 + 18203 0.78 0.038982
Target:  5'- cCGaGCaGGcCGCCGCCGcCGCCGCCGCCGa -3'
miRNA:   3'- -GC-CG-CC-GUGGCGGC-GUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 61075 0.78 0.040054
Target:  5'- uGGCGGCAUUGucuCCGCAaCGCCGCCACc -3'
miRNA:   3'- gCCGCCGUGGC---GGCGUgGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 40802 0.78 0.040054
Target:  5'- cCGGUGGCGaacCCGCGCaCACCGCCGCg -3'
miRNA:   3'- -GCCGCCGUggcGGCGUG-GUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 31288 0.78 0.040491
Target:  5'- uCGGCGGCuACCGCCGUACCucggugaccgggcagACCaGCCAg -3'
miRNA:   3'- -GCCGCCG-UGGCGGCGUGG---------------UGG-CGGUg -5'
19053 3' -65.2 NC_004684.1 + 11667 0.78 0.041044
Target:  5'- aCGGCGGCcaacgugACCGCCGCGCaagcaGCUGCgCACu -3'
miRNA:   3'- -GCCGCCG-------UGGCGGCGUGg----UGGCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 24176 0.78 0.041155
Target:  5'- aGGCGGUGCCGCCGC-CCAaaaUGCCGg -3'
miRNA:   3'- gCCGCCGUGGCGGCGuGGUg--GCGGUg -5'
19053 3' -65.2 NC_004684.1 + 3800 0.78 0.041155
Target:  5'- aGGCGGUaaccACCGCCGCGCCGCgcagGCCGa -3'
miRNA:   3'- gCCGCCG----UGGCGGCGUGGUGg---CGGUg -5'
19053 3' -65.2 NC_004684.1 + 19742 0.78 0.042286
Target:  5'- aGGCGGCcaaCGCCGCACUgGCCGuCCACg -3'
miRNA:   3'- gCCGCCGug-GCGGCGUGG-UGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 65305 0.78 0.042286
Target:  5'- aCGGCGGCcUCGCUguGCACCACgGCCAg -3'
miRNA:   3'- -GCCGCCGuGGCGG--CGUGGUGgCGGUg -5'
19053 3' -65.2 NC_004684.1 + 11985 0.78 0.042286
Target:  5'- cCGGCGGCACCGaCgGCAUgACC-CCGCa -3'
miRNA:   3'- -GCCGCCGUGGC-GgCGUGgUGGcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 47176 0.78 0.042286
Target:  5'- gCGGCGGCcaggGCCGCCGCugCGCgGCgaACg -3'
miRNA:   3'- -GCCGCCG----UGGCGGCGugGUGgCGg-UG- -5'
19053 3' -65.2 NC_004684.1 + 59810 0.78 0.043447
Target:  5'- cCGGguugcCGcGCACCaGCCGCACCAgCGCCACc -3'
miRNA:   3'- -GCC-----GC-CGUGG-CGGCGUGGUgGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.