miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 222 0.75 0.074374
Target:  5'- aCGucCGGCACCauGCCGUACauCGCCGCCACg -3'
miRNA:   3'- -GCc-GCCGUGG--CGGCGUG--GUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 437 0.68 0.219083
Target:  5'- uGGacgaGGaCACCGCUGCGCgCAUCGUgGCc -3'
miRNA:   3'- gCCg---CC-GUGGCGGCGUG-GUGGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 493 0.74 0.087215
Target:  5'- aGGCcGCGCCgaagGCCGCGCCGaaggUCGCCACc -3'
miRNA:   3'- gCCGcCGUGG----CGGCGUGGU----GGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 620 0.67 0.241378
Target:  5'- gGGCGGCGaguaCCGCGCCGaggUCGCCGg -3'
miRNA:   3'- gCCGCCGUggc-GGCGUGGU---GGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 664 0.67 0.255643
Target:  5'- uGGUGcGCAagaccgucaccgaguUCGCCGCGCagcgcaagACCGCCGCc -3'
miRNA:   3'- gCCGC-CGU---------------GGCGGCGUGg-------UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 714 0.73 0.104859
Target:  5'- gGGUgggaagaccugGGCACCGCCGgugaccggGCCGCCGCCGa -3'
miRNA:   3'- gCCG-----------CCGUGGCGGCg-------UGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 758 0.68 0.230002
Target:  5'- uGGCGGCGCUcCUGgaCACCGCCGagGCa -3'
miRNA:   3'- gCCGCCGUGGcGGC--GUGGUGGCggUG- -5'
19053 3' -65.2 NC_004684.1 + 841 0.69 0.188955
Target:  5'- cCGGUgaGGCgcacaacgccuACCGCCGUGcCCGCCggGCCGCg -3'
miRNA:   3'- -GCCG--CCG-----------UGGCGGCGU-GGUGG--CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 889 0.81 0.023157
Target:  5'- aGGCGGCccgcgagGCCGCCGCcaagGCCuaGCCGCCACc -3'
miRNA:   3'- gCCGCCG-------UGGCGGCG----UGG--UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 929 0.67 0.24724
Target:  5'- gGGUGGCGgCGUgGagacaaCGCCGCCACc -3'
miRNA:   3'- gCCGCCGUgGCGgCgug---GUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 1052 0.67 0.255643
Target:  5'- uGGCGGCACCgguugugcuggcugGCgGCGCUggacgugaucggugACCagGCCGCg -3'
miRNA:   3'- gCCGCCGUGG--------------CGgCGUGG--------------UGG--CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 1415 0.66 0.298433
Target:  5'- gGGCGGCugaGCCuGCGcgacCCGCUGuCCACg -3'
miRNA:   3'- gCCGCCGuggCGG-CGU----GGUGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 1491 0.69 0.186151
Target:  5'- gCGGCGGCccugguggccaaccuGCgCGCCGCGCUcaACgGCgACg -3'
miRNA:   3'- -GCCGCCG---------------UG-GCGGCGUGG--UGgCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 1494 0.68 0.230002
Target:  5'- aGGUGGC-CCGCCuguuGCGCgACCaCUACg -3'
miRNA:   3'- gCCGCCGuGGCGG----CGUGgUGGcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 1605 0.68 0.219083
Target:  5'- aCGGCaucGGuCGCCGUgcgCGCGcCCACCGgCGCg -3'
miRNA:   3'- -GCCG---CC-GUGGCG---GCGU-GGUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 1713 0.68 0.229446
Target:  5'- uGGCaGGCACCggccaguGCCGCGaccUCACCaCCACc -3'
miRNA:   3'- gCCG-CCGUGG-------CGGCGU---GGUGGcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 1934 0.72 0.113407
Target:  5'- gGGCcuGGUACCGgCGCacggugGCCGCgCGCCGCa -3'
miRNA:   3'- gCCG--CCGUGGCgGCG------UGGUG-GCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 2067 0.7 0.170518
Target:  5'- uGGCcugccuGGCGCUgGCCGUggugcacagcgagGCCGCCGUCGCg -3'
miRNA:   3'- gCCG------CCGUGG-CGGCG-------------UGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 2271 0.71 0.12582
Target:  5'- gCGGCgGGCAUUGCCGCcaGCCuggGCCACg -3'
miRNA:   3'- -GCCG-CCGUGGCGGCG--UGGuggCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 2459 0.68 0.208097
Target:  5'- gGGCGGCcagcucgGCgUGCCGUACCACCugaccuggaGCUGCu -3'
miRNA:   3'- gCCGCCG-------UG-GCGGCGUGGUGG---------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.