miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 61443 0.74 0.078439
Target:  5'- cCGGCGGCAUUGUCuCGCCGCCGgUGCu -3'
miRNA:   3'- -GCCGCCGUGGCGGcGUGGUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 15690 0.76 0.060049
Target:  5'- gCGGCGGCACCGa--CGCCACCGgCAUc -3'
miRNA:   3'- -GCCGCCGUGGCggcGUGGUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 8723 0.75 0.066843
Target:  5'- uGGCGGCGCUGaucCCGauguUCGCCGCCGCg -3'
miRNA:   3'- gCCGCCGUGGC---GGCgu--GGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 57532 0.75 0.066843
Target:  5'- gCGGUGGC-CCGCCuccagaGCGCgACCGCCGa -3'
miRNA:   3'- -GCCGCCGuGGCGG------CGUGgUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 37121 0.75 0.068654
Target:  5'- gGGCuGGCguGCCGCCaGCGCaCugCGCCGCc -3'
miRNA:   3'- gCCG-CCG--UGGCGG-CGUG-GugGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 13097 0.75 0.070512
Target:  5'- uCGcGCGGUGCaCGCCGCcCCACCgGCCAg -3'
miRNA:   3'- -GC-CGCCGUG-GCGGCGuGGUGG-CGGUg -5'
19053 3' -65.2 NC_004684.1 + 5902 0.75 0.070512
Target:  5'- gCGGCGGCGCUGaucgCGCACgACCggcugGCCGCg -3'
miRNA:   3'- -GCCGCCGUGGCg---GCGUGgUGG-----CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 55200 0.75 0.072418
Target:  5'- gCGGCGGCGCUggauGCCuacgaggcguugGCACCGCgCGCCAa -3'
miRNA:   3'- -GCCGCCGUGG----CGG------------CGUGGUG-GCGGUg -5'
19053 3' -65.2 NC_004684.1 + 27338 0.74 0.076381
Target:  5'- aCGGCGGUAUCGCCGUgggCACCGgCAUg -3'
miRNA:   3'- -GCCGCCGUGGCGGCGug-GUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 12865 0.76 0.060049
Target:  5'- aGGCcGcCACCGCCGagGCCGCCGCCGg -3'
miRNA:   3'- gCCGcC-GUGGCGGCg-UGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 65305 0.78 0.042286
Target:  5'- aCGGCGGCcUCGCUguGCACCACgGCCAg -3'
miRNA:   3'- -GCCGCCGuGGCGG--CGUGGUGgCGGUg -5'
19053 3' -65.2 NC_004684.1 + 11985 0.78 0.042286
Target:  5'- cCGGCGGCACCGaCgGCAUgACC-CCGCa -3'
miRNA:   3'- -GCCGCCGUGGC-GgCGUGgUGGcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 32514 0.82 0.02139
Target:  5'- --uCGGCACCGuCCGgGCCACCGCCACc -3'
miRNA:   3'- gccGCCGUGGC-GGCgUGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 59962 0.8 0.028895
Target:  5'- uGGCGGCGCUcguGCCGCACCcggaccuuGCCGCaCGCg -3'
miRNA:   3'- gCCGCCGUGG---CGGCGUGG--------UGGCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 51494 0.79 0.032225
Target:  5'- gCGGaUGGCACCGCCcgguCACCGCCGCCugGCg -3'
miRNA:   3'- -GCC-GCCGUGGCGGc---GUGGUGGCGG--UG- -5'
19053 3' -65.2 NC_004684.1 + 61075 0.78 0.040054
Target:  5'- uGGCGGCAUUGucuCCGCAaCGCCGCCACc -3'
miRNA:   3'- gCCGCCGUGGC---GGCGUgGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 31288 0.78 0.040491
Target:  5'- uCGGCGGCuACCGCCGUACCucggugaccgggcagACCaGCCAg -3'
miRNA:   3'- -GCCGCCG-UGGCGGCGUGG---------------UGG-CGGUg -5'
19053 3' -65.2 NC_004684.1 + 11667 0.78 0.041044
Target:  5'- aCGGCGGCcaacgugACCGCCGCGCaagcaGCUGCgCACu -3'
miRNA:   3'- -GCCGCCG-------UGGCGGCGUGg----UGGCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 24176 0.78 0.041155
Target:  5'- aGGCGGUGCCGCCGC-CCAaaaUGCCGg -3'
miRNA:   3'- gCCGCCGUGGCGGCGuGGUg--GCGGUg -5'
19053 3' -65.2 NC_004684.1 + 47176 0.78 0.042286
Target:  5'- gCGGCGGCcaggGCCGCCGCugCGCgGCgaACg -3'
miRNA:   3'- -GCCGCCG----UGGCGGCGugGUGgCGg-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.