miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 2463 0.75 0.072418
Target:  5'- aGGCGcuCACCGCCGcCACCugggucGCCGCCAa -3'
miRNA:   3'- gCCGCc-GUGGCGGC-GUGG------UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 2516 0.68 0.219083
Target:  5'- cCGGgGGCGCgaccggacaaCG-CGCACCACC-CCACc -3'
miRNA:   3'- -GCCgCCGUG----------GCgGCGUGGUGGcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 2532 0.67 0.253219
Target:  5'- -uGCGGaCGCUGCgGCACCugCGUggagCGCg -3'
miRNA:   3'- gcCGCC-GUGGCGgCGUGGugGCG----GUG- -5'
19053 3' -65.2 NC_004684.1 + 2718 0.71 0.146811
Target:  5'- cCGGgGGCAagugCGCCaCACCGCacgGCCACa -3'
miRNA:   3'- -GCCgCCGUg---GCGGcGUGGUGg--CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 3267 0.66 0.284907
Target:  5'- uGGcCGGaCAUCGUggaCGCACUGCUGCCGg -3'
miRNA:   3'- gCC-GCC-GUGGCG---GCGUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 3385 0.68 0.224486
Target:  5'- aGcGCGGCAagCGCCuggagACCGCCGCCAa -3'
miRNA:   3'- gC-CGCCGUg-GCGGcg---UGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 3412 0.71 0.139481
Target:  5'- aCGGCacccuGGCACCGCUG----GCCGCCACa -3'
miRNA:   3'- -GCCG-----CCGUGGCGGCguggUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 3489 0.71 0.139481
Target:  5'- gGGCcGCACCGUgGcCGCCAggaCGCCGCa -3'
miRNA:   3'- gCCGcCGUGGCGgC-GUGGUg--GCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 3494 0.76 0.056755
Target:  5'- cCGGUaccuggaccaccuGGCACCGCUGgGCCcgaugaagGCCGCCACg -3'
miRNA:   3'- -GCCG-------------CCGUGGCGGCgUGG--------UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 3549 0.69 0.184303
Target:  5'- -cGUGGCACCgacagcgugcGCCGCGCCAuCCGCa-- -3'
miRNA:   3'- gcCGCCGUGG----------CGGCGUGGU-GGCGgug -5'
19053 3' -65.2 NC_004684.1 + 3657 0.67 0.278327
Target:  5'- cCGGuCGGCACCGauGCGCaCACCcuguuGgCACg -3'
miRNA:   3'- -GCC-GCCGUGGCggCGUG-GUGG-----CgGUG- -5'
19053 3' -65.2 NC_004684.1 + 3680 0.69 0.203536
Target:  5'- uGGCccGGCACCGCCucccGCACgACaaCCACa -3'
miRNA:   3'- gCCG--CCGUGGCGG----CGUGgUGgcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 3693 0.68 0.224486
Target:  5'- uGGCaGGagAUCGCCaGCGCCGCCGCg-- -3'
miRNA:   3'- gCCG-CCg-UGGCGG-CGUGGUGGCGgug -5'
19053 3' -65.2 NC_004684.1 + 3800 0.78 0.041155
Target:  5'- aGGCGGUaaccACCGCCGCGCCGCgcagGCCGa -3'
miRNA:   3'- gCCGCCG----UGGCGGCGUGGUGg---CGGUg -5'
19053 3' -65.2 NC_004684.1 + 4198 0.7 0.152926
Target:  5'- gCGGUGGUucugaucACCGCCagccacgacugcauGCGCCugCGCgGCg -3'
miRNA:   3'- -GCCGCCG-------UGGCGG--------------CGUGGugGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 4325 0.75 0.074374
Target:  5'- aCGGCGGCACgguaGCCGcCACCaACCGUUAg -3'
miRNA:   3'- -GCCGCCGUGg---CGGC-GUGG-UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 4451 0.68 0.22889
Target:  5'- uCGGCGcGCGCCGCgCGCuggucggcuucgUCACCgGCCAg -3'
miRNA:   3'- -GCCGC-CGUGGCG-GCGu-----------GGUGG-CGGUg -5'
19053 3' -65.2 NC_004684.1 + 4569 0.71 0.143103
Target:  5'- aGGCcaucgaGGCGCUGCUGCACU--CGCCACc -3'
miRNA:   3'- gCCG------CCGUGGCGGCGUGGugGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 4885 0.67 0.278327
Target:  5'- aGGCGGCucagGCgGCCugguCGCCACCgGCCuCg -3'
miRNA:   3'- gCCGCCG----UGgCGGc---GUGGUGG-CGGuG- -5'
19053 3' -65.2 NC_004684.1 + 5085 0.68 0.237917
Target:  5'- cCGGUGGCACCccgaagaccuagcagGCaagGUGCuCACCGCCGa -3'
miRNA:   3'- -GCCGCCGUGG---------------CGg--CGUG-GUGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.