miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 3' -54.1 NC_004684.1 + 100 0.68 0.716398
Target:  5'- cCGUUUCGACGUAAUGU-GGUcuuuguacGGCGgGa -3'
miRNA:   3'- -GCGGAGUUGCAUUACAgCCA--------CCGCgC- -5'
19068 3' -54.1 NC_004684.1 + 1229 0.68 0.7058
Target:  5'- gGCCUCGGCGgccugGUCGGUcGCcCGg -3'
miRNA:   3'- gCGGAGUUGCauua-CAGCCAcCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 2190 0.68 0.747663
Target:  5'- gCGUCUCuGACGUAAUGUCGuucGUguacGGCGgGa -3'
miRNA:   3'- -GCGGAG-UUGCAUUACAGC---CA----CCGCgC- -5'
19068 3' -54.1 NC_004684.1 + 4791 0.66 0.842816
Target:  5'- gCGCCUCGGCG------CGGUGGC-CGa -3'
miRNA:   3'- -GCGGAGUUGCauuacaGCCACCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 5666 0.68 0.716398
Target:  5'- uGCCUCAGcCGUGGUcggaGGUGGC-CGg -3'
miRNA:   3'- gCGGAGUU-GCAUUAcag-CCACCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 8401 0.68 0.726916
Target:  5'- gGCCUCGACGgcAUGUucCGuGUGuggaacccGCGCGc -3'
miRNA:   3'- gCGGAGUUGCauUACA--GC-CAC--------CGCGC- -5'
19068 3' -54.1 NC_004684.1 + 8940 0.7 0.630238
Target:  5'- gGCCUCAGCGggcaGUCGGguccGGCaCGg -3'
miRNA:   3'- gCGGAGUUGCauuaCAGCCa---CCGcGC- -5'
19068 3' -54.1 NC_004684.1 + 10686 0.74 0.387106
Target:  5'- aCGCCUCAACGgucgGgacgCGGUGGCucGCa -3'
miRNA:   3'- -GCGGAGUUGCauuaCa---GCCACCG--CGc -5'
19068 3' -54.1 NC_004684.1 + 13644 0.76 0.297926
Target:  5'- cCGCCgcgCAccuGCGUGGUGUCucGUGGCGCa -3'
miRNA:   3'- -GCGGa--GU---UGCAUUACAGc-CACCGCGc -5'
19068 3' -54.1 NC_004684.1 + 15291 0.67 0.787697
Target:  5'- aGCC-CGACGU----UUGGcUGGCGCGa -3'
miRNA:   3'- gCGGaGUUGCAuuacAGCC-ACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 17593 0.67 0.787697
Target:  5'- cCGCUggAAUcUAGUGUCuGUGGUGCGg -3'
miRNA:   3'- -GCGGagUUGcAUUACAGcCACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 20668 1.09 0.002007
Target:  5'- cCGCCUCAACGUAAUGUCGGUGGCGCGc -3'
miRNA:   3'- -GCGGAGUUGCAUUACAGCCACCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 22428 0.68 0.75787
Target:  5'- gGCCUCAACGccaucgccGUCGGcgcGGCgGCGa -3'
miRNA:   3'- gCGGAGUUGCauua----CAGCCa--CCG-CGC- -5'
19068 3' -54.1 NC_004684.1 + 25547 0.67 0.777898
Target:  5'- aCGCCgaggaacGCGUAcgcGUCGGUGGCcaGCGc -3'
miRNA:   3'- -GCGGagu----UGCAUua-CAGCCACCG--CGC- -5'
19068 3' -54.1 NC_004684.1 + 25557 0.69 0.695131
Target:  5'- aGCCUCGGCGcGGUGgaaGGUG-CGCu -3'
miRNA:   3'- gCGGAGUUGCaUUACag-CCACcGCGc -5'
19068 3' -54.1 NC_004684.1 + 29935 0.65 0.858745
Target:  5'- aGCUgcCAGCGUGaagGUGUCGGUcaccuccGGUGCc -3'
miRNA:   3'- gCGGa-GUUGCAU---UACAGCCA-------CCGCGc -5'
19068 3' -54.1 NC_004684.1 + 31654 0.69 0.651968
Target:  5'- cCGCCggGACGcUGGcacUGUCGGcGGUGCGg -3'
miRNA:   3'- -GCGGagUUGC-AUU---ACAGCCaCCGCGC- -5'
19068 3' -54.1 NC_004684.1 + 33471 0.77 0.269691
Target:  5'- uGCCUCGGCGgcGgcugCGGUGGaCGCGg -3'
miRNA:   3'- gCGGAGUUGCauUaca-GCCACC-GCGC- -5'
19068 3' -54.1 NC_004684.1 + 33876 0.67 0.767952
Target:  5'- gGCCUaccaGGCGgugcgggcGGUGcCGGUGGgCGCGg -3'
miRNA:   3'- gCGGAg---UUGCa-------UUACaGCCACC-GCGC- -5'
19068 3' -54.1 NC_004684.1 + 40331 0.66 0.816104
Target:  5'- aCGaCCUCGGCGcUGGgcagGUCGcUGGCgGCGg -3'
miRNA:   3'- -GC-GGAGUUGC-AUUa---CAGCcACCG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.