Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19068 | 3' | -54.1 | NC_004684.1 | + | 60221 | 0.67 | 0.80681 |
Target: 5'- gGCCUCGGCGUuguaGGUGcacccgcaggCGGUGGC-Ca -3' miRNA: 3'- gCGGAGUUGCA----UUACa---------GCCACCGcGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 42216 | 0.68 | 0.715342 |
Target: 5'- gGCC--GACGUGgccgccgGUGUCGGcaccGGCGCGa -3' miRNA: 3'- gCGGagUUGCAU-------UACAGCCa---CCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 8401 | 0.68 | 0.726916 |
Target: 5'- gGCCUCGACGgcAUGUucCGuGUGuggaacccGCGCGc -3' miRNA: 3'- gCGGAGUUGCauUACA--GC-CAC--------CGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 22428 | 0.68 | 0.75787 |
Target: 5'- gGCCUCAACGccaucgccGUCGGcgcGGCgGCGa -3' miRNA: 3'- gCGGAGUUGCauua----CAGCCa--CCG-CGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 64636 | 0.67 | 0.76695 |
Target: 5'- uGCCgUCGGCGUcguggcgcaccgcGAUGUCGGc-GCGCa -3' miRNA: 3'- gCGG-AGUUGCA-------------UUACAGCCacCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 33876 | 0.67 | 0.767952 |
Target: 5'- gGCCUaccaGGCGgugcgggcGGUGcCGGUGGgCGCGg -3' miRNA: 3'- gCGGAg---UUGCa-------UUACaGCCACC-GCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 41258 | 0.67 | 0.787697 |
Target: 5'- gGCCUcCAGC-UGGUGU-GGUGGgGCa -3' miRNA: 3'- gCGGA-GUUGcAUUACAgCCACCgCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 15291 | 0.67 | 0.787697 |
Target: 5'- aGCC-CGACGU----UUGGcUGGCGCGa -3' miRNA: 3'- gCGGaGUUGCAuuacAGCC-ACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 17593 | 0.67 | 0.787697 |
Target: 5'- cCGCUggAAUcUAGUGUCuGUGGUGCGg -3' miRNA: 3'- -GCGGagUUGcAUUACAGcCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 1229 | 0.68 | 0.7058 |
Target: 5'- gGCCUCGGCGgccugGUCGGUcGCcCGg -3' miRNA: 3'- gCGGAGUUGCauua-CAGCCAcCGcGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 60934 | 0.68 | 0.704736 |
Target: 5'- aCGCCUCGgccaguucgacauGCGUGcUGUacaccucguggcUGGUGGCGuCGg -3' miRNA: 3'- -GCGGAGU-------------UGCAUuACA------------GCCACCGC-GC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 25557 | 0.69 | 0.695131 |
Target: 5'- aGCCUCGGCGcGGUGgaaGGUG-CGCu -3' miRNA: 3'- gCGGAGUUGCaUUACag-CCACcGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 13644 | 0.76 | 0.297926 |
Target: 5'- cCGCCgcgCAccuGCGUGGUGUCucGUGGCGCa -3' miRNA: 3'- -GCGGa--GU---UGCAUUACAGc-CACCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 10686 | 0.74 | 0.387106 |
Target: 5'- aCGCCUCAACGgucgGgacgCGGUGGCucGCa -3' miRNA: 3'- -GCGGAGUUGCauuaCa---GCCACCG--CGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 46676 | 0.72 | 0.492156 |
Target: 5'- uGCgUUGGCGUugcGGUGgcggugCGGUGGCGCGc -3' miRNA: 3'- gCGgAGUUGCA---UUACa-----GCCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 62957 | 0.71 | 0.554701 |
Target: 5'- gCGCCgacgAugGUGgcGUGcUCGGUGGUGCGc -3' miRNA: 3'- -GCGGag--UugCAU--UAC-AGCCACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 58820 | 0.7 | 0.608515 |
Target: 5'- cCGCCUCgGAUGUccggGAUGaugCGGUcGGCGCa -3' miRNA: 3'- -GCGGAG-UUGCA----UUACa--GCCA-CCGCGc -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 47680 | 0.7 | 0.629151 |
Target: 5'- gCGCCUUcuugucgAAgGUGAUGcUGGuUGGCGCGg -3' miRNA: 3'- -GCGGAG-------UUgCAUUACaGCC-ACCGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 49524 | 0.7 | 0.630238 |
Target: 5'- gGCC-CAGCGUGcacccggCGGUGuGCGCGg -3' miRNA: 3'- gCGGaGUUGCAUuaca---GCCAC-CGCGC- -5' |
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19068 | 3' | -54.1 | NC_004684.1 | + | 31654 | 0.69 | 0.651968 |
Target: 5'- cCGCCggGACGcUGGcacUGUCGGcGGUGCGg -3' miRNA: 3'- -GCGGagUUGC-AUU---ACAGCCaCCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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