miRNA display CGI


Results 21 - 40 of 299 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 14805 0.66 0.310776
Target:  5'- cGGCGCGCugucCACCGgACUGUggggcgCGCCGUg- -3'
miRNA:   3'- -CCGCGCG----GUGGCgUGGCG------GUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 48708 0.66 0.325439
Target:  5'- aGCGUGCgGCgGCcCUGCCAgCGCu- -3'
miRNA:   3'- cCGCGCGgUGgCGuGGCGGUgGCGuu -5'
19068 5' -64.1 NC_004684.1 + 23722 0.66 0.332961
Target:  5'- cGGCGCGCucaaCAUCGCugGCgGCgCACUGCu- -3'
miRNA:   3'- -CCGCGCG----GUGGCG--UGgCG-GUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 39671 0.66 0.332961
Target:  5'- cGCGUGCCucguGCuCGCGCUcgGCCGCCGa-- -3'
miRNA:   3'- cCGCGCGG----UG-GCGUGG--CGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 54262 0.66 0.306476
Target:  5'- aGGCGCugcguggagaaGCUGCCGCGCUGgCCgguggggcggcgugcACCGCGc -3'
miRNA:   3'- -CCGCG-----------CGGUGGCGUGGC-GG---------------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 26121 0.66 0.318044
Target:  5'- cGGCGCuGUCcgACCGCACCaGCaccucgcugGCCGCGc -3'
miRNA:   3'- -CCGCG-CGG--UGGCGUGG-CGg--------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 54410 0.66 0.303635
Target:  5'- cGGCccgGCGCUcgguGuuGC-CUGCCGCCGCGu -3'
miRNA:   3'- -CCG---CGCGG----UggCGuGGCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 63723 0.66 0.33984
Target:  5'- cGGUGCcggGCCACCGUAcgaugacCCGgCACCGgGc -3'
miRNA:   3'- -CCGCG---CGGUGGCGU-------GGCgGUGGCgUu -5'
19068 5' -64.1 NC_004684.1 + 43813 0.66 0.332961
Target:  5'- uGGCGCGCgCGCaGCGaggUCGCCAgguacucguccCCGCAc -3'
miRNA:   3'- -CCGCGCG-GUGgCGU---GGCGGU-----------GGCGUu -5'
19068 5' -64.1 NC_004684.1 + 1039 0.66 0.303635
Target:  5'- cGCGuCGCCcugGCCGC-CCGCC-CCgGCGu -3'
miRNA:   3'- cCGC-GCGG---UGGCGuGGCGGuGG-CGUu -5'
19068 5' -64.1 NC_004684.1 + 42889 0.66 0.303635
Target:  5'- cGGCcucUGgCACCGagACCGCCACCGaCGAc -3'
miRNA:   3'- -CCGc--GCgGUGGCg-UGGCGGUGGC-GUU- -5'
19068 5' -64.1 NC_004684.1 + 13257 0.66 0.310776
Target:  5'- aGGCcgugacCGCCAgCGCGCUggugGCCGCCGguGg -3'
miRNA:   3'- -CCGc-----GCGGUgGCGUGG----CGGUGGCguU- -5'
19068 5' -64.1 NC_004684.1 + 1006 0.66 0.302928
Target:  5'- aGGUGCGgagauuuCCACCGCGCaGCuCGCgGCGu -3'
miRNA:   3'- -CCGCGC-------GGUGGCGUGgCG-GUGgCGUu -5'
19068 5' -64.1 NC_004684.1 + 21830 0.66 0.303635
Target:  5'- gGGCGCgaucaGCCgggcauccaugGCCGC-CCGCaagGCCGCAc -3'
miRNA:   3'- -CCGCG-----CGG-----------UGGCGuGGCGg--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 32001 0.66 0.34061
Target:  5'- aGGC-CGCCACCGaACUGCUgACCGgGc -3'
miRNA:   3'- -CCGcGCGGUGGCgUGGCGG-UGGCgUu -5'
19068 5' -64.1 NC_004684.1 + 59662 0.66 0.336006
Target:  5'- uGCGCGCCAgUCGCGCauugacccuuuccugCGCCgaGCUGCGc -3'
miRNA:   3'- cCGCGCGGU-GGCGUG---------------GCGG--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 4380 0.66 0.303635
Target:  5'- cGGCGCGgucauCCugCGCAUCgcguucccgGCCACCGg-- -3'
miRNA:   3'- -CCGCGC-----GGugGCGUGG---------CGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 25799 0.66 0.303635
Target:  5'- uGGC-CGaCCugCGCcaggaaauGCCGCCGCCgaaGCAAg -3'
miRNA:   3'- -CCGcGC-GGugGCG--------UGGCGGUGG---CGUU- -5'
19068 5' -64.1 NC_004684.1 + 25383 0.66 0.303635
Target:  5'- aGCGCcuacGCCGCCGCGCacaGCgGCgGCc- -3'
miRNA:   3'- cCGCG----CGGUGGCGUGg--CGgUGgCGuu -5'
19068 5' -64.1 NC_004684.1 + 62355 0.66 0.303635
Target:  5'- cGCGCcaGCCugCGCACCucGUCGUCGCGGu -3'
miRNA:   3'- cCGCG--CGGugGCGUGG--CGGUGGCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.