miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 39212 0.65 0.34526
Target:  5'- cGUGCGCC-UCGCGCagguugcacgccaGCCAUUGCAGg -3'
miRNA:   3'- cCGCGCGGuGGCGUGg------------CGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 15089 0.66 0.332203
Target:  5'- cGGCGCggugGCCGCCcuggagGCcgaccuuGCCGUCACCGgGAc -3'
miRNA:   3'- -CCGCG----CGGUGG------CG-------UGGCGGUGGCgUU- -5'
19068 5' -64.1 NC_004684.1 + 55741 0.66 0.318044
Target:  5'- uGCGCuccCCGuuGCACCGgC-CCGCAGa -3'
miRNA:   3'- cCGCGc--GGUggCGUGGCgGuGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 5934 0.66 0.332203
Target:  5'- cGCGCugGCCACCGgGCgGUCcaaccugGCCGCGc -3'
miRNA:   3'- cCGCG--CGGUGGCgUGgCGG-------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 24263 0.66 0.310776
Target:  5'- aGGUGCGCCA--GC-UCGCCACCGa-- -3'
miRNA:   3'- -CCGCGCGGUggCGuGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 48708 0.66 0.325439
Target:  5'- aGCGUGCgGCgGCcCUGCCAgCGCu- -3'
miRNA:   3'- cCGCGCGgUGgCGuGGCGGUgGCGuu -5'
19068 5' -64.1 NC_004684.1 + 40945 0.66 0.318044
Target:  5'- gGGCaCGCCGCUGCggcuGCCGuuCCAgCGCGGu -3'
miRNA:   3'- -CCGcGCGGUGGCG----UGGC--GGUgGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 66979 0.66 0.318044
Target:  5'- cGGgGUGCCAgUCGCccagcuugcCCGCCACgGCGGu -3'
miRNA:   3'- -CCgCGCGGU-GGCGu--------GGCGGUGgCGUU- -5'
19068 5' -64.1 NC_004684.1 + 61075 0.66 0.310776
Target:  5'- uGGCGgcauUGUCuCCGCaacGCCGCCACCGg-- -3'
miRNA:   3'- -CCGC----GCGGuGGCG---UGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 42889 0.66 0.303635
Target:  5'- cGGCcucUGgCACCGagACCGCCACCGaCGAc -3'
miRNA:   3'- -CCGc--GCgGUGGCg-UGGCGGUGGC-GUU- -5'
19068 5' -64.1 NC_004684.1 + 13257 0.66 0.310776
Target:  5'- aGGCcgugacCGCCAgCGCGCUggugGCCGCCGguGg -3'
miRNA:   3'- -CCGc-----GCGGUgGCGUGG----CGGUGGCguU- -5'
19068 5' -64.1 NC_004684.1 + 62355 0.66 0.303635
Target:  5'- cGCGCcaGCCugCGCACCucGUCGUCGCGGu -3'
miRNA:   3'- cCGCG--CGGugGCGUGG--CGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 52450 0.66 0.317311
Target:  5'- cGGC-CGCCACCgggaugcccgacgGCaugGCCGCCACCa--- -3'
miRNA:   3'- -CCGcGCGGUGG-------------CG---UGGCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 1006 0.66 0.302928
Target:  5'- aGGUGCGgagauuuCCACCGCGCaGCuCGCgGCGu -3'
miRNA:   3'- -CCGCGC-------GGUGGCGUGgCG-GUGgCGUu -5'
19068 5' -64.1 NC_004684.1 + 14805 0.66 0.310776
Target:  5'- cGGCGCGCugucCACCGgACUGUggggcgCGCCGUg- -3'
miRNA:   3'- -CCGCGCG----GUGGCgUGGCG------GUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 29663 0.66 0.325439
Target:  5'- cGUGCuCCugCGCGCgGCCgaccagACCGCGc -3'
miRNA:   3'- cCGCGcGGugGCGUGgCGG------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 2368 0.66 0.325439
Target:  5'- uGGC-CGCCAUCGaCAUgGCCACCu--- -3'
miRNA:   3'- -CCGcGCGGUGGC-GUGgCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 25383 0.66 0.303635
Target:  5'- aGCGCcuacGCCGCCGCGCacaGCgGCgGCc- -3'
miRNA:   3'- cCGCG----CGGUGGCGUGg--CGgUGgCGuu -5'
19068 5' -64.1 NC_004684.1 + 26121 0.66 0.318044
Target:  5'- cGGCGCuGUCcgACCGCACCaGCaccucgcugGCCGCGc -3'
miRNA:   3'- -CCGCG-CGG--UGGCGUGG-CGg--------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 21830 0.66 0.303635
Target:  5'- gGGCGCgaucaGCCgggcauccaugGCCGC-CCGCaagGCCGCAc -3'
miRNA:   3'- -CCGCG-----CGG-----------UGGCGuGGCGg--UGGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.