miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 10322 0.73 0.113986
Target:  5'- uGCGCGCCGCaaCGCagGCCGCCAUCGa-- -3'
miRNA:   3'- cCGCGCGGUG--GCG--UGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 2727 0.74 0.092144
Target:  5'- aGUGCGCCacACCGCACgGCCACaCGUu- -3'
miRNA:   3'- cCGCGCGG--UGGCGUGgCGGUG-GCGuu -5'
19068 5' -64.1 NC_004684.1 + 18477 0.74 0.092144
Target:  5'- uGGUGCuGUCGguguCCgGCACCGCCACCGCu- -3'
miRNA:   3'- -CCGCG-CGGU----GG-CGUGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 65441 0.74 0.092144
Target:  5'- uGGCGUGCgG-CGCGCgGCCACCGUg- -3'
miRNA:   3'- -CCGCGCGgUgGCGUGgCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 15153 0.73 0.099826
Target:  5'- aGCGCGCaGCUG-GCCGCCGCCGCc- -3'
miRNA:   3'- cCGCGCGgUGGCgUGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 5711 0.73 0.102519
Target:  5'- aGCGCGCCcUCGCGCCGCagauGCCGUu- -3'
miRNA:   3'- cCGCGCGGuGGCGUGGCGg---UGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 46703 0.73 0.105279
Target:  5'- uGGCGCGCC-CUGUgcgaGCgCGCCACCGaCAu -3'
miRNA:   3'- -CCGCGCGGuGGCG----UG-GCGGUGGC-GUu -5'
19068 5' -64.1 NC_004684.1 + 4468 0.73 0.10811
Target:  5'- uGCGCGCgagGCCGUcguugGCCGCUACCGUAAc -3'
miRNA:   3'- cCGCGCGg--UGGCG-----UGGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 59516 0.73 0.110134
Target:  5'- gGGCGCGUCguagGCCugcgcacagguccuGCACCGCCAgCGCGc -3'
miRNA:   3'- -CCGCGCGG----UGG--------------CGUGGCGGUgGCGUu -5'
19068 5' -64.1 NC_004684.1 + 17854 0.74 0.08971
Target:  5'- uGUGCGUCACCG-ACCGCaCGCCGCc- -3'
miRNA:   3'- cCGCGCGGUGGCgUGGCG-GUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 61308 0.74 0.087337
Target:  5'- cGGCagcacCGCCGCCGgGCCGCCGCCcucgGCGg -3'
miRNA:   3'- -CCGc----GCGGUGGCgUGGCGGUGG----CGUu -5'
19068 5' -64.1 NC_004684.1 + 21139 0.74 0.085025
Target:  5'- cGGCgGUGUCACCGCGCaCGCgaaauaCGCCGCAGc -3'
miRNA:   3'- -CCG-CGCGGUGGCGUG-GCG------GUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 24886 0.8 0.030945
Target:  5'- -cCGCGCCAUCGUggcuacgagaugGCCGCCGCCGCGAu -3'
miRNA:   3'- ccGCGCGGUGGCG------------UGGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 20341 0.78 0.043076
Target:  5'- cGGCGuCGcCCGgUGCACCGUCACCGCGc -3'
miRNA:   3'- -CCGC-GC-GGUgGCGUGGCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 4242 0.76 0.064722
Target:  5'- cGGCGCGCaggaGCCGCACUcgGCCACCaccaccaucgccaGCAAg -3'
miRNA:   3'- -CCGCGCGg---UGGCGUGG--CGGUGG-------------CGUU- -5'
19068 5' -64.1 NC_004684.1 + 24484 0.76 0.064898
Target:  5'- aGCGCGCUACCGCcgggggcgguGCCGCaggGCCGCGc -3'
miRNA:   3'- cCGCGCGGUGGCG----------UGGCGg--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 16810 0.75 0.07411
Target:  5'- gGGCGCGCCAuUCGCGCCagguucaaagcggGUCGCCGCc- -3'
miRNA:   3'- -CCGCGCGGU-GGCGUGG-------------CGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 37125 0.75 0.076344
Target:  5'- uGGCGUGCCGCCagcGCACUGC-GCCGCc- -3'
miRNA:   3'- -CCGCGCGGUGG---CGUGGCGgUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 42445 0.74 0.08277
Target:  5'- uGGCG-GUCAUCGCGCCGCUACUGUc- -3'
miRNA:   3'- -CCGCgCGGUGGCGUGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 28894 0.74 0.08277
Target:  5'- cGGCGCGCCGUgGCgACCGCCGCUGa-- -3'
miRNA:   3'- -CCGCGCGGUGgCG-UGGCGGUGGCguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.