miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 20703 1.07 0.000265
Target:  5'- gGGCGCGCCACCGCACCGCCACCGCAAc -3'
miRNA:   3'- -CCGCGCGGUGGCGUGGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 45035 0.84 0.015892
Target:  5'- aGCGCGaCCGCCGCcgccGCCGCCACCGCc- -3'
miRNA:   3'- cCGCGC-GGUGGCG----UGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 23914 0.81 0.025493
Target:  5'- uGCGC-CCGCCGCACCugcuGCCGCCGCAc -3'
miRNA:   3'- cCGCGcGGUGGCGUGG----CGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 12865 0.81 0.026946
Target:  5'- aGGC-CGCCACCGCcgagGCCGCCGCCGgGGa -3'
miRNA:   3'- -CCGcGCGGUGGCG----UGGCGGUGGCgUU- -5'
19068 5' -64.1 NC_004684.1 + 18209 0.8 0.02848
Target:  5'- aGGC-CGCCGCCGcCGCCGCCGCCGa-- -3'
miRNA:   3'- -CCGcGCGGUGGC-GUGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 23869 0.8 0.02848
Target:  5'- uGGCGCaGCCACCGCucCCGCCccuGCCGCu- -3'
miRNA:   3'- -CCGCG-CGGUGGCGu-GGCGG---UGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 40944 0.8 0.029279
Target:  5'- aGGCGUGCCGCCGUACaccggGCCACCGgCGg -3'
miRNA:   3'- -CCGCGCGGUGGCGUGg----CGGUGGC-GUu -5'
19068 5' -64.1 NC_004684.1 + 24886 0.8 0.030945
Target:  5'- -cCGCGCCAUCGUggcuacgagaugGCCGCCGCCGCGAu -3'
miRNA:   3'- ccGCGCGGUGGCG------------UGGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 33884 0.8 0.033526
Target:  5'- aGC-CGCCACCGCccgcgaguacaggGCCGCCGCCGCGu -3'
miRNA:   3'- cCGcGCGGUGGCG-------------UGGCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 41703 0.79 0.038588
Target:  5'- aGCuGCGCCACgCGCGuuGCCGCCGUAGg -3'
miRNA:   3'- cCG-CGCGGUG-GCGUggCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 25959 0.78 0.042372
Target:  5'- cGGCgGCaCCGCCGCACCaccgccacgggggacGCCACCGCGAc -3'
miRNA:   3'- -CCG-CGcGGUGGCGUGG---------------CGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 20341 0.78 0.043076
Target:  5'- cGGCGuCGcCCGgUGCACCGUCACCGCGc -3'
miRNA:   3'- -CCGC-GC-GGUgGCGUGGCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 11294 0.78 0.043076
Target:  5'- -cCGUGCCACCGcCACCGCCagcauGCCGCAc -3'
miRNA:   3'- ccGCGCGGUGGC-GUGGCGG-----UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 41729 0.78 0.044275
Target:  5'- nGGuCGCGCCcuGCCcgGUACCGCCGCCGCu- -3'
miRNA:   3'- -CC-GCGCGG--UGG--CGUGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 43664 0.76 0.058049
Target:  5'- aGUGCGCCGCCagcgauguugagcGCGCCGCCGCC-CAGg -3'
miRNA:   3'- cCGCGCGGUGG-------------CGUGGCGGUGGcGUU- -5'
19068 5' -64.1 NC_004684.1 + 45074 0.76 0.058845
Target:  5'- uGGCGgGCCACggggagcaucgggguUcgGCACCGCCGCCGCGc -3'
miRNA:   3'- -CCGCgCGGUG---------------G--CGUGGCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 4242 0.76 0.064722
Target:  5'- cGGCGCGCaggaGCCGCACUcgGCCACCaccaccaucgccaGCAAg -3'
miRNA:   3'- -CCGCGCGg---UGGCGUGG--CGGUGG-------------CGUU- -5'
19068 5' -64.1 NC_004684.1 + 48978 0.76 0.064898
Target:  5'- cGGUGCGcCCGCCGgGCCGCCGaaGUAGu -3'
miRNA:   3'- -CCGCGC-GGUGGCgUGGCGGUggCGUU- -5'
19068 5' -64.1 NC_004684.1 + 24484 0.76 0.064898
Target:  5'- aGCGCGCUACCGCcgggggcgguGCCGCaggGCCGCGc -3'
miRNA:   3'- cCGCGCGGUGGCG----------UGGCGg--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 1853 0.76 0.066684
Target:  5'- gGGUaCGCCACCGCGCUGCaCACCGa-- -3'
miRNA:   3'- -CCGcGCGGUGGCGUGGCG-GUGGCguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.