miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 493 0.73 0.107824
Target:  5'- aGGcCGCGCCgaagGCCGCGCCgaaggucGCCACCgGCGc -3'
miRNA:   3'- -CC-GCGCGG----UGGCGUGG-------CGGUGG-CGUu -5'
19068 5' -64.1 NC_004684.1 + 536 0.66 0.310056
Target:  5'- cGUGCugGCCAgCGCggucgagGCCGCCACCGa-- -3'
miRNA:   3'- cCGCG--CGGUgGCG-------UGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 664 0.7 0.160001
Target:  5'- uGGUGCGCaagACCGuCACCGaguuCGCCGCGc -3'
miRNA:   3'- -CCGCGCGg--UGGC-GUGGCg---GUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 728 0.69 0.196099
Target:  5'- gGGCacCGCCggugACCGgGCCGCCGCCGa-- -3'
miRNA:   3'- -CCGc-GCGG----UGGCgUGGCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 847 0.7 0.177235
Target:  5'- aGGCGCacaacGCCuACCGCcgugcCCGCCggGCCGCGc -3'
miRNA:   3'- -CCGCG-----CGG-UGGCGu----GGCGG--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 897 0.74 0.08971
Target:  5'- cGCGagGCCGCCGCcaaggccuaGCCGCCACCGgGu -3'
miRNA:   3'- cCGCg-CGGUGGCG---------UGGCGGUGGCgUu -5'
19068 5' -64.1 NC_004684.1 + 1006 0.66 0.302928
Target:  5'- aGGUGCGgagauuuCCACCGCGCaGCuCGCgGCGu -3'
miRNA:   3'- -CCGCGC-------GGUGGCGUGgCG-GUGgCGUu -5'
19068 5' -64.1 NC_004684.1 + 1039 0.66 0.303635
Target:  5'- cGCGuCGCCcugGCCGC-CCGCC-CCgGCGu -3'
miRNA:   3'- cCGC-GCGG---UGGCGuGGCGGuGG-CGUu -5'
19068 5' -64.1 NC_004684.1 + 1082 0.7 0.172778
Target:  5'- --aGCGCUACuaCGCGCCGCUGCCGUc- -3'
miRNA:   3'- ccgCGCGGUG--GCGUGGCGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 1153 0.72 0.126312
Target:  5'- gGGCGUGCCgACCGUGCacuuuggUGCCgaGCCGCAGg -3'
miRNA:   3'- -CCGCGCGG-UGGCGUG-------GCGG--UGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 1575 0.68 0.233332
Target:  5'- uGGUGCGCCuguCUGCGCugagCGCCAgCGUg- -3'
miRNA:   3'- -CCGCGCGGu--GGCGUG----GCGGUgGCGuu -5'
19068 5' -64.1 NC_004684.1 + 1623 0.67 0.282971
Target:  5'- cGCGCGcCCACCgGCgcgcgGCgGCCAacgcCCGCGAg -3'
miRNA:   3'- cCGCGC-GGUGG-CG-----UGgCGGU----GGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 1853 0.76 0.066684
Target:  5'- gGGUaCGCCACCGCGCUGCaCACCGa-- -3'
miRNA:   3'- -CCGcGCGGUGGCGUGGCG-GUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 1955 0.72 0.13345
Target:  5'- uGGC-CGCgCGCCGCA-CGCCAgCGCAGc -3'
miRNA:   3'- -CCGcGCG-GUGGCGUgGCGGUgGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 2368 0.66 0.325439
Target:  5'- uGGC-CGCCAUCGaCAUgGCCACCu--- -3'
miRNA:   3'- -CCGcGCGGUGGC-GUGgCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 2463 0.7 0.177235
Target:  5'- aGGCGCucaCCGCCGcCACCuggGUCGCCGCc- -3'
miRNA:   3'- -CCGCGc--GGUGGC-GUGG---CGGUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 2727 0.74 0.092144
Target:  5'- aGUGCGCCacACCGCACgGCCACaCGUu- -3'
miRNA:   3'- cCGCGCGG--UGGCGUGgCGGUG-GCGuu -5'
19068 5' -64.1 NC_004684.1 + 2732 0.66 0.310776
Target:  5'- aGGUGC-CgCugCGCGCCGaCAUCGCGGu -3'
miRNA:   3'- -CCGCGcG-GugGCGUGGCgGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 3480 0.7 0.164163
Target:  5'- aGCcaCGCCggGCCGCACCGUgGCCGCc- -3'
miRNA:   3'- cCGc-GCGG--UGGCGUGGCGgUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 3532 0.67 0.269824
Target:  5'- aGGC-CGCCACgCGCGCaCGUggCACCGaCAGc -3'
miRNA:   3'- -CCGcGCGGUG-GCGUG-GCG--GUGGC-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.