miRNA display CGI


Results 21 - 40 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 3567 0.71 0.155935
Target:  5'- cGcCGCGCCAuCCGCACCaUCACCaGCAc -3'
miRNA:   3'- cC-GCGCGGU-GGCGUGGcGGUGG-CGUu -5'
19068 5' -64.1 NC_004684.1 + 3677 0.71 0.155935
Target:  5'- cGGUG-GCC-CgGCACCGCCucCCGCAc -3'
miRNA:   3'- -CCGCgCGGuGgCGUGGCGGu-GGCGUu -5'
19068 5' -64.1 NC_004684.1 + 3708 0.7 0.186457
Target:  5'- --aGCGCCGCCGCGCUGgCCGguaucaacgcuUCGCAAc -3'
miRNA:   3'- ccgCGCGGUGGCGUGGC-GGU-----------GGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 3838 0.69 0.190743
Target:  5'- cGGCGUGCCgaccgacgaccacACCGaagGCaCGCCGCUGCGc -3'
miRNA:   3'- -CCGCGCGG-------------UGGCg--UG-GCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 3881 0.66 0.318044
Target:  5'- uGCGaCGCCagGCCGCcCUGCUGgCGCAGg -3'
miRNA:   3'- cCGC-GCGG--UGGCGuGGCGGUgGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 4026 0.67 0.263437
Target:  5'- uGGCGCGUCgGCCGCucggugcgcuggGCgGUCACCGgGGa -3'
miRNA:   3'- -CCGCGCGG-UGGCG------------UGgCGGUGGCgUU- -5'
19068 5' -64.1 NC_004684.1 + 4242 0.76 0.064722
Target:  5'- cGGCGCGCaggaGCCGCACUcgGCCACCaccaccaucgccaGCAAg -3'
miRNA:   3'- -CCGCGCGg---UGGCGUGG--CGGUGG-------------CGUU- -5'
19068 5' -64.1 NC_004684.1 + 4380 0.66 0.303635
Target:  5'- cGGCGCGgucauCCugCGCAUCgcguucccgGCCACCGg-- -3'
miRNA:   3'- -CCGCGC-----GGugGCGUGG---------CGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 4424 0.66 0.332961
Target:  5'- uGCGCaCCACCGaGCaCGCCACCa--- -3'
miRNA:   3'- cCGCGcGGUGGCgUG-GCGGUGGcguu -5'
19068 5' -64.1 NC_004684.1 + 4452 0.69 0.206174
Target:  5'- cGGCGCG-CGCCGCGCgcuggucggcuuCGUCACCGg-- -3'
miRNA:   3'- -CCGCGCgGUGGCGUG------------GCGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 4468 0.73 0.10811
Target:  5'- uGCGCGCgagGCCGUcguugGCCGCUACCGUAAc -3'
miRNA:   3'- cCGCGCGg--UGGCG-----UGGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 4569 0.7 0.167991
Target:  5'- aGGCcaucgagGCGCUGCUGCACuCGCCACCcggugugacGCGAa -3'
miRNA:   3'- -CCG-------CGCGGUGGCGUG-GCGGUGG---------CGUU- -5'
19068 5' -64.1 NC_004684.1 + 4775 0.7 0.181794
Target:  5'- uGCGCGUCGCCagcaaGCGCCucggcgcggugGCCgACCGCAAc -3'
miRNA:   3'- cCGCGCGGUGG-----CGUGG-----------CGG-UGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 5100 0.69 0.215087
Target:  5'- cGCGCGgCGCUggagcaGCGCCuggaccugcugaagGCCACCGCAu -3'
miRNA:   3'- cCGCGCgGUGG------CGUGG--------------CGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 5574 0.71 0.151963
Target:  5'- gGGCGCGCgcgaaAUCGCcauggaggccuUCGCCACCGCGAc -3'
miRNA:   3'- -CCGCGCGg----UGGCGu----------GGCGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 5711 0.73 0.102519
Target:  5'- aGCGCGCCcUCGCGCCGCagauGCCGUu- -3'
miRNA:   3'- cCGCGCGGuGGCGUGGCGg---UGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 5782 0.68 0.221576
Target:  5'- aGCGCGCUACUGCGCCaggcgugcgagGUCgggacguGCCGCAc -3'
miRNA:   3'- cCGCGCGGUGGCGUGG-----------CGG-------UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 5819 0.67 0.289733
Target:  5'- aGGCGUcCCAgCUGCGCgagUGCUGCCGCAc -3'
miRNA:   3'- -CCGCGcGGU-GGCGUG---GCGGUGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 5891 0.76 0.066684
Target:  5'- uGGCGCGCaucgaGCGCCGCCGCCuGCGc -3'
miRNA:   3'- -CCGCGCGgugg-CGUGGCGGUGG-CGUu -5'
19068 5' -64.1 NC_004684.1 + 5934 0.66 0.332203
Target:  5'- cGCGCugGCCACCGgGCgGUCcaaccugGCCGCGc -3'
miRNA:   3'- cCGCG--CGGUGGCgUGgCGG-------UGGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.