miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 18277 0.73 0.326066
Target:  5'- -uUCCaGGCCGACgccgacggcgaccUGugGCAcCUGCCGg -3'
miRNA:   3'- guAGGaCCGGCUG-------------ACugCGU-GAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 19612 1.1 0.000927
Target:  5'- aCAUCCUGGCCGACUGACGCACUACCGg -3'
miRNA:   3'- -GUAGGACCGGCUGACUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 20425 0.68 0.560626
Target:  5'- -cUCCUGGCgcaucaGcCUGGCGCugUGCaCGg -3'
miRNA:   3'- guAGGACCGg-----CuGACUGCGugAUG-GC- -5'
19071 3' -56.4 NC_004684.1 + 22112 0.66 0.710233
Target:  5'- -uUCCUguGGCCGGaaaccgGACGCAaggGCCGc -3'
miRNA:   3'- guAGGA--CCGGCUga----CUGCGUga-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 22164 0.66 0.698641
Target:  5'- --gCCUGaccagcaccaagcGCCGcAUgGACGCGCUGCCGc -3'
miRNA:   3'- guaGGAC-------------CGGC-UGaCUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23498 0.71 0.430065
Target:  5'- -uUCCUGGCCuGGaaGACGCugU-CCGg -3'
miRNA:   3'- guAGGACCGG-CUgaCUGCGugAuGGC- -5'
19071 3' -56.4 NC_004684.1 + 23503 0.68 0.591483
Target:  5'- uCAUCCaccugcccagcgaUGcGCCGAacaUGGCGCacauGCUGCCGa -3'
miRNA:   3'- -GUAGG-------------AC-CGGCUg--ACUGCG----UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23635 0.66 0.731074
Target:  5'- uGUCCcGGCCuuGCUGGCacCGCUGCUGa -3'
miRNA:   3'- gUAGGaCCGGc-UGACUGc-GUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23712 0.66 0.698641
Target:  5'- --aCCUGGgCGGC-GGCGCGCUcaacaucGCUGg -3'
miRNA:   3'- guaGGACCgGCUGaCUGCGUGA-------UGGC- -5'
19071 3' -56.4 NC_004684.1 + 27520 0.69 0.539603
Target:  5'- --gCCUGGgCGAgCUGAUGCGC-GCCa -3'
miRNA:   3'- guaGGACCgGCU-GACUGCGUGaUGGc -5'
19071 3' -56.4 NC_004684.1 + 30026 0.7 0.468489
Target:  5'- -cUCCUGGCUGAgCgUGaacGCGCGCUcGCCGg -3'
miRNA:   3'- guAGGACCGGCU-G-AC---UGCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 31219 0.8 0.122091
Target:  5'- --aCCUGGCCGACgccggUGACGCcAUUGCCGa -3'
miRNA:   3'- guaGGACCGGCUG-----ACUGCG-UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 32751 0.67 0.661326
Target:  5'- aCGUCgC-GGCCGACcuggUGGCGUgagcaugaccgggugGCUGCCGg -3'
miRNA:   3'- -GUAG-GaCCGGCUG----ACUGCG---------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 33085 0.69 0.529191
Target:  5'- --aUCUGuCCGGC-GugGCGCUGCCGa -3'
miRNA:   3'- guaGGACcGGCUGaCugCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 33655 0.68 0.571223
Target:  5'- gCGUCCUGGCCGcGCUG-CGUcgaguaguucggGCcACCGc -3'
miRNA:   3'- -GUAGGACCGGC-UGACuGCG------------UGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 36078 0.66 0.6891
Target:  5'- aCGUCCUGGCUGGuCUGccCGguC-ACCGa -3'
miRNA:   3'- -GUAGGACCGGCU-GACu-GCguGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 36929 0.66 0.6891
Target:  5'- gGUCgaGGCCGGgUGgacACGC-CUGCUGg -3'
miRNA:   3'- gUAGgaCCGGCUgAC---UGCGuGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 37691 0.67 0.667757
Target:  5'- gGUUCUGGCCcacGACguUGACGCGCgcacGCgCGg -3'
miRNA:   3'- gUAGGACCGG---CUG--ACUGCGUGa---UG-GC- -5'
19071 3' -56.4 NC_004684.1 + 39775 0.77 0.178088
Target:  5'- gCGUCCUGGCCGuuCUcGAUGCGCUgguagcugcGCCGg -3'
miRNA:   3'- -GUAGGACCGGCu-GA-CUGCGUGA---------UGGC- -5'
19071 3' -56.4 NC_004684.1 + 41092 0.71 0.411561
Target:  5'- --gCCUGGCCGAgCUG-CGUACcgaugGCCGa -3'
miRNA:   3'- guaGGACCGGCU-GACuGCGUGa----UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.