miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 629 0.68 0.571223
Target:  5'- --aCCUGGCCGACga--GCACggcgACCc -3'
miRNA:   3'- guaGGACCGGCUGacugCGUGa---UGGc -5'
19071 3' -56.4 NC_004684.1 + 1375 0.67 0.645211
Target:  5'- aCAcCCUGGCCGACgccaaGGCcgccguuGCACUgGCCa -3'
miRNA:   3'- -GUaGGACCGGCUGa----CUG-------CGUGA-UGGc -5'
19071 3' -56.4 NC_004684.1 + 1686 0.71 0.420752
Target:  5'- --aCCaGGCCGAgCUGGCGCGC-AUCGa -3'
miRNA:   3'- guaGGaCCGGCU-GACUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 2061 0.69 0.508597
Target:  5'- cCAUCgUGGCCuGcCUGGCGCug-GCCGu -3'
miRNA:   3'- -GUAGgACCGG-CuGACUGCGugaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 3076 0.67 0.661326
Target:  5'- --aCCUGGCgguguucaaccaccaCGACggccagGGCGCACUGCgCGc -3'
miRNA:   3'- guaGGACCG---------------GCUGa-----CUGCGUGAUG-GC- -5'
19071 3' -56.4 NC_004684.1 + 3264 0.78 0.164432
Target:  5'- --gCCUGGCCGGacaucgugGACGCACUGCUGc -3'
miRNA:   3'- guaGGACCGGCUga------CUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 3978 0.67 0.62369
Target:  5'- uCAUCCUGGCCGguggcaGCUccagucGAUGUgcgcccaccaccuGCUGCCGu -3'
miRNA:   3'- -GUAGGACCGGC------UGA------CUGCG-------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 4413 0.7 0.488349
Target:  5'- aGUCCUGGCCGcCggaacaACGCGCggGCCu -3'
miRNA:   3'- gUAGGACCGGCuGac----UGCGUGa-UGGc -5'
19071 3' -56.4 NC_004684.1 + 5599 0.69 0.508597
Target:  5'- --gCCgacggGGCCGAgCUGGCGCGCauggUGCUGg -3'
miRNA:   3'- guaGGa----CCGGCU-GACUGCGUG----AUGGC- -5'
19071 3' -56.4 NC_004684.1 + 5990 0.69 0.518854
Target:  5'- aGUCCcGGCCuGGCUcaGGCGCACcAUCGg -3'
miRNA:   3'- gUAGGaCCGG-CUGA--CUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 7483 0.7 0.467506
Target:  5'- aCGUUUUGGCCuGGCUGguugucuACGCGCUgGCCGc -3'
miRNA:   3'- -GUAGGACCGG-CUGAC-------UGCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 7701 0.67 0.635528
Target:  5'- -uUCCaGGCCGucGCcGugGCGCUgGCCGu -3'
miRNA:   3'- guAGGaCCGGC--UGaCugCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 7937 0.69 0.539603
Target:  5'- aCAUCgccGCCGACcGGCGCAC-ACCGg -3'
miRNA:   3'- -GUAGgacCGGCUGaCUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 9291 0.7 0.458714
Target:  5'- -uUCCcgacGCCGACgGugGCGCUACCc -3'
miRNA:   3'- guAGGac--CGGCUGaCugCGUGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 9710 0.66 0.710233
Target:  5'- cCAUgCCUGGCCGA-UGGC-CACcUGCUGu -3'
miRNA:   3'- -GUA-GGACCGGCUgACUGcGUG-AUGGC- -5'
19071 3' -56.4 NC_004684.1 + 10634 0.7 0.478368
Target:  5'- gCGUgCUGGCCGAg-GACGaggaGCUGCCc -3'
miRNA:   3'- -GUAgGACCGGCUgaCUGCg---UGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 13460 0.67 0.667757
Target:  5'- --gCCUGGCCGACacggUGAcccCGCACcucGCCu -3'
miRNA:   3'- guaGGACCGGCUG----ACU---GCGUGa--UGGc -5'
19071 3' -56.4 NC_004684.1 + 13779 0.69 0.528154
Target:  5'- uGUCCgGGCCGcgcguGCUcaagagcGGCGCACUGuCCGa -3'
miRNA:   3'- gUAGGaCCGGC-----UGA-------CUGCGUGAU-GGC- -5'
19071 3' -56.4 NC_004684.1 + 16413 0.66 0.731074
Target:  5'- aCAUCUgccaggGGUCGgccuacgacguGCUGGCGCAC-ACCa -3'
miRNA:   3'- -GUAGGa-----CCGGC-----------UGACUGCGUGaUGGc -5'
19071 3' -56.4 NC_004684.1 + 17070 0.67 0.635528
Target:  5'- cCcgCCUGGCCG---GGCGCACcgACUGg -3'
miRNA:   3'- -GuaGGACCGGCugaCUGCGUGa-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.