miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 19612 1.1 0.000927
Target:  5'- aCAUCCUGGCCGACUGACGCACUACCGg -3'
miRNA:   3'- -GUAGGACCGGCUGACUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 31219 0.8 0.122091
Target:  5'- --aCCUGGCCGACgccggUGACGCcAUUGCCGa -3'
miRNA:   3'- guaGGACCGGCUG-----ACUGCG-UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 3264 0.78 0.164432
Target:  5'- --gCCUGGCCGGacaucgugGACGCACUGCUGc -3'
miRNA:   3'- guaGGACCGGCUga------CUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 39775 0.77 0.178088
Target:  5'- gCGUCCUGGCCGuuCUcGAUGCGCUgguagcugcGCCGg -3'
miRNA:   3'- -GUAGGACCGGCu-GA-CUGCGUGA---------UGGC- -5'
19071 3' -56.4 NC_004684.1 + 18277 0.73 0.326066
Target:  5'- -uUCCaGGCCGACgccgacggcgaccUGugGCAcCUGCCGg -3'
miRNA:   3'- guAGGaCCGGCUG-------------ACugCGU-GAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 56160 0.72 0.358286
Target:  5'- --cCCUGGCCGAC-GACggcgacgacggcgGCGCUAUCGa -3'
miRNA:   3'- guaGGACCGGCUGaCUG-------------CGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 41092 0.71 0.411561
Target:  5'- --gCCUGGCCGAgCUG-CGUACcgaugGCCGa -3'
miRNA:   3'- guaGGACCGGCU-GACuGCGUGa----UGGC- -5'
19071 3' -56.4 NC_004684.1 + 1686 0.71 0.420752
Target:  5'- --aCCaGGCCGAgCUGGCGCGC-AUCGa -3'
miRNA:   3'- guaGGaCCGGCU-GACUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23498 0.71 0.430065
Target:  5'- -uUCCUGGCCuGGaaGACGCugU-CCGg -3'
miRNA:   3'- guAGGACCGG-CUgaCUGCGugAuGGC- -5'
19071 3' -56.4 NC_004684.1 + 9291 0.7 0.458714
Target:  5'- -uUCCcgacGCCGACgGugGCGCUACCc -3'
miRNA:   3'- guAGGac--CGGCUGaCugCGUGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 7483 0.7 0.467506
Target:  5'- aCGUUUUGGCCuGGCUGguugucuACGCGCUgGCCGc -3'
miRNA:   3'- -GUAGGACCGG-CUGAC-------UGCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 30026 0.7 0.468489
Target:  5'- -cUCCUGGCUGAgCgUGaacGCGCGCUcGCCGg -3'
miRNA:   3'- guAGGACCGGCU-G-AC---UGCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 10634 0.7 0.478368
Target:  5'- gCGUgCUGGCCGAg-GACGaggaGCUGCCc -3'
miRNA:   3'- -GUAgGACCGGCUgaCUGCg---UGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 4413 0.7 0.488349
Target:  5'- aGUCCUGGCCGcCggaacaACGCGCggGCCu -3'
miRNA:   3'- gUAGGACCGGCuGac----UGCGUGa-UGGc -5'
19071 3' -56.4 NC_004684.1 + 5599 0.69 0.508597
Target:  5'- --gCCgacggGGCCGAgCUGGCGCGCauggUGCUGg -3'
miRNA:   3'- guaGGa----CCGGCU-GACUGCGUG----AUGGC- -5'
19071 3' -56.4 NC_004684.1 + 2061 0.69 0.508597
Target:  5'- cCAUCgUGGCCuGcCUGGCGCug-GCCGu -3'
miRNA:   3'- -GUAGgACCGG-CuGACUGCGugaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 58962 0.69 0.518854
Target:  5'- --cCCUGGcCCGGCgGGCGCGCggguuCCa -3'
miRNA:   3'- guaGGACC-GGCUGaCUGCGUGau---GGc -5'
19071 3' -56.4 NC_004684.1 + 5990 0.69 0.518854
Target:  5'- aGUCCcGGCCuGGCUcaGGCGCACcAUCGg -3'
miRNA:   3'- gUAGGaCCGG-CUGA--CUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 13779 0.69 0.528154
Target:  5'- uGUCCgGGCCGcgcguGCUcaagagcGGCGCACUGuCCGa -3'
miRNA:   3'- gUAGGaCCGGC-----UGA-------CUGCGUGAU-GGC- -5'
19071 3' -56.4 NC_004684.1 + 52751 0.69 0.528154
Target:  5'- uCGUCgUGGCCG-CUGGCGCAgUcguugacGCCc -3'
miRNA:   3'- -GUAGgACCGGCuGACUGCGUgA-------UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.