miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 3' -56.4 NC_004684.1 + 36929 0.66 0.6891
Target:  5'- gGUCgaGGCCGGgUGgacACGC-CUGCUGg -3'
miRNA:   3'- gUAGgaCCGGCUgAC---UGCGuGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 20425 0.68 0.560626
Target:  5'- -cUCCUGGCgcaucaGcCUGGCGCugUGCaCGg -3'
miRNA:   3'- guAGGACCGg-----CuGACUGCGugAUG-GC- -5'
19071 3' -56.4 NC_004684.1 + 629 0.68 0.571223
Target:  5'- --aCCUGGCCGACga--GCACggcgACCc -3'
miRNA:   3'- guaGGACCGGCUGacugCGUGa---UGGc -5'
19071 3' -56.4 NC_004684.1 + 3978 0.67 0.62369
Target:  5'- uCAUCCUGGCCGguggcaGCUccagucGAUGUgcgcccaccaccuGCUGCCGu -3'
miRNA:   3'- -GUAGGACCGGC------UGA------CUGCG-------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 7701 0.67 0.635528
Target:  5'- -uUCCaGGCCGucGCcGugGCGCUgGCCGu -3'
miRNA:   3'- guAGGaCCGGC--UGaCugCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 65615 0.67 0.657033
Target:  5'- gCGUCCUGGuuGGCguccagccACGCGCgcagcuCCGg -3'
miRNA:   3'- -GUAGGACCggCUGac------UGCGUGau----GGC- -5'
19071 3' -56.4 NC_004684.1 + 41905 0.67 0.657033
Target:  5'- ---gCUGGCCGACcgGACGaCAUcgugGCCGu -3'
miRNA:   3'- guagGACCGGCUGa-CUGC-GUGa---UGGC- -5'
19071 3' -56.4 NC_004684.1 + 32751 0.67 0.661326
Target:  5'- aCGUCgC-GGCCGACcuggUGGCGUgagcaugaccgggugGCUGCCGg -3'
miRNA:   3'- -GUAG-GaCCGGCUG----ACUGCG---------------UGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 63181 0.66 0.6891
Target:  5'- --gCCgGGUCGACUcGACGCG--GCCGa -3'
miRNA:   3'- guaGGaCCGGCUGA-CUGCGUgaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 33085 0.69 0.529191
Target:  5'- --aUCUGuCCGGC-GugGCGCUGCCGa -3'
miRNA:   3'- guaGGACcGGCUGaCugCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 52751 0.69 0.528154
Target:  5'- uCGUCgUGGCCG-CUGGCGCAgUcguugacGCCc -3'
miRNA:   3'- -GUAGgACCGGCuGACUGCGUgA-------UGGc -5'
19071 3' -56.4 NC_004684.1 + 5990 0.69 0.518854
Target:  5'- aGUCCcGGCCuGGCUcaGGCGCACcAUCGg -3'
miRNA:   3'- gUAGGaCCGG-CUGA--CUGCGUGaUGGC- -5'
19071 3' -56.4 NC_004684.1 + 3264 0.78 0.164432
Target:  5'- --gCCUGGCCGGacaucgugGACGCACUGCUGc -3'
miRNA:   3'- guaGGACCGGCUga------CUGCGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 39775 0.77 0.178088
Target:  5'- gCGUCCUGGCCGuuCUcGAUGCGCUgguagcugcGCCGg -3'
miRNA:   3'- -GUAGGACCGGCu-GA-CUGCGUGA---------UGGC- -5'
19071 3' -56.4 NC_004684.1 + 56160 0.72 0.358286
Target:  5'- --cCCUGGCCGAC-GACggcgacgacggcgGCGCUAUCGa -3'
miRNA:   3'- guaGGACCGGCUGaCUG-------------CGUGAUGGC- -5'
19071 3' -56.4 NC_004684.1 + 23498 0.71 0.430065
Target:  5'- -uUCCUGGCCuGGaaGACGCugU-CCGg -3'
miRNA:   3'- guAGGACCGG-CUgaCUGCGugAuGGC- -5'
19071 3' -56.4 NC_004684.1 + 9291 0.7 0.458714
Target:  5'- -uUCCcgacGCCGACgGugGCGCUACCc -3'
miRNA:   3'- guAGGac--CGGCUGaCugCGUGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 7483 0.7 0.467506
Target:  5'- aCGUUUUGGCCuGGCUGguugucuACGCGCUgGCCGc -3'
miRNA:   3'- -GUAGGACCGG-CUGAC-------UGCGUGA-UGGC- -5'
19071 3' -56.4 NC_004684.1 + 10634 0.7 0.478368
Target:  5'- gCGUgCUGGCCGAg-GACGaggaGCUGCCc -3'
miRNA:   3'- -GUAgGACCGGCUgaCUGCg---UGAUGGc -5'
19071 3' -56.4 NC_004684.1 + 4413 0.7 0.488349
Target:  5'- aGUCCUGGCCGcCggaacaACGCGCggGCCu -3'
miRNA:   3'- gUAGGACCGGCuGac----UGCGUGa-UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.