miRNA display CGI


Results 21 - 40 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 26293 0.66 0.784381
Target:  5'- cUCGGCCAuCGguaCGCAGCuCGGCCAg- -3'
miRNA:   3'- aGGCCGGUuGC---GCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 52976 0.66 0.764423
Target:  5'- cUUGGCCAGCaguucGCGCAGCAUcuCCuGCGg -3'
miRNA:   3'- aGGCCGGUUG-----CGCGUUGUGuuGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 59347 0.66 0.76846
Target:  5'- cCCGGCCGuugguguugaacACGCGCAcgguguccuggaaccGCcCGGCgGCAc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGU---------------UGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 34088 0.66 0.794132
Target:  5'- -gCGGCgGGCGCGaaCAACGCGAgUGCGc -3'
miRNA:   3'- agGCCGgUUGCGC--GUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 52458 0.66 0.764423
Target:  5'- aCCGGgaugcCCGACG-GCAugGCcGCCACc -3'
miRNA:   3'- aGGCC-----GGUUGCgCGUugUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 13265 0.66 0.751157
Target:  5'- aCC-GCCAGCGCGCugguggccgccgguGGCugGugCGCGc -3'
miRNA:   3'- aGGcCGGUUGCGCG--------------UUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 25319 0.66 0.774475
Target:  5'- gUCGGCCcuGGCgGCGUAugGCGGCCu-- -3'
miRNA:   3'- aGGCCGG--UUG-CGCGUugUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 48298 0.66 0.764423
Target:  5'- aCCGGCCuuCGCGCAccaGCAgu-UCGCu -3'
miRNA:   3'- aGGCCGGuuGCGCGU---UGUguuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 29610 0.66 0.794132
Target:  5'- uUCCuaGGCagCGGCGUGCAGCuGC-ACCGCGa -3'
miRNA:   3'- -AGG--CCG--GUUGCGCGUUG-UGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 33718 0.66 0.751157
Target:  5'- -gCGGCgGugGCccgaacuacucgacGCAGCGCGGCCAgGa -3'
miRNA:   3'- agGCCGgUugCG--------------CGUUGUGUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 53944 0.66 0.784381
Target:  5'- gUCGGCCAG-GCaCAGCugAgcACCGCAc -3'
miRNA:   3'- aGGCCGGUUgCGcGUUGugU--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 34666 0.66 0.784381
Target:  5'- aUCCggcaGGCCAACGCGa---GCAACCc-- -3'
miRNA:   3'- -AGG----CCGGUUGCGCguugUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 51241 0.66 0.793164
Target:  5'- aUCGGCCGgucgaugccgcacGCGCGCAugAuCGGCUcguACAg -3'
miRNA:   3'- aGGCCGGU-------------UGCGCGUugU-GUUGG---UGU- -5'
19071 5' -54.9 NC_004684.1 + 48790 0.66 0.754237
Target:  5'- gCgGGCCGAUGaUGCAGgACAgGCCGCc -3'
miRNA:   3'- aGgCCGGUUGC-GCGUUgUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 55641 0.66 0.774475
Target:  5'- uUUCGGCUGGCGUGCGugGaggagGGCCugGc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUugUg----UUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 29652 0.66 0.783398
Target:  5'- aCC-GCCAacgacgugcuccuGCGCGCGGC-CGACCAg- -3'
miRNA:   3'- aGGcCGGU-------------UGCGCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 28082 0.66 0.784381
Target:  5'- gCCGGgCCGcCGCGCGACcCGcACCGg- -3'
miRNA:   3'- aGGCC-GGUuGCGCGUUGuGU-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 5228 0.66 0.794132
Target:  5'- --aGGCCAugGUGUccgcGCGCGGCCGa- -3'
miRNA:   3'- aggCCGGUugCGCGu---UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 47940 0.66 0.794132
Target:  5'- uUCCaGGCCuugGugGCGuCGGCACGGCUg-- -3'
miRNA:   3'- -AGG-CCGG---UugCGC-GUUGUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 45186 0.66 0.793164
Target:  5'- gUCGGCCAccaccccgccGCGCuccagcgGCAGCGCGuCCAUg -3'
miRNA:   3'- aGGCCGGU----------UGCG-------CGUUGUGUuGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.