miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 48298 0.66 0.764423
Target:  5'- aCCGGCCuuCGCGCAccaGCAgu-UCGCu -3'
miRNA:   3'- aGGCCGGuuGCGCGU---UGUguuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 56926 0.66 0.764423
Target:  5'- cUCCuGCCuggAGCGCGCccggGACugGugCACGg -3'
miRNA:   3'- -AGGcCGG---UUGCGCG----UUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 29224 0.66 0.764423
Target:  5'- -aCGGCCAggacAUGCuGUGGCGCGGCCcCAu -3'
miRNA:   3'- agGCCGGU----UGCG-CGUUGUGUUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 4235 0.66 0.764423
Target:  5'- gCCuGCgCGGCGCGCAggagccGCACucgGCCACc -3'
miRNA:   3'- aGGcCG-GUUGCGCGU------UGUGu--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 52976 0.66 0.764423
Target:  5'- cUUGGCCAGCaguucGCGCAGCAUcuCCuGCGg -3'
miRNA:   3'- aGGCCGGUUG-----CGCGUUGUGuuGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 52458 0.66 0.764423
Target:  5'- aCCGGgaugcCCGACG-GCAugGCcGCCACc -3'
miRNA:   3'- aGGCC-----GGUUGCgCGUugUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 5937 0.66 0.754237
Target:  5'- gCUGGCCAcCGgGCggUcCAACCugGc -3'
miRNA:   3'- aGGCCGGUuGCgCGuuGuGUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 50107 0.66 0.794132
Target:  5'- cCCGGCCAGaaaaccaGCGCcGCcgaGCAGuuGCAg -3'
miRNA:   3'- aGGCCGGUUg------CGCGuUG---UGUUggUGU- -5'
19071 5' -54.9 NC_004684.1 + 19469 0.66 0.771474
Target:  5'- -gUGGCC--CGCGCGACAugcgccccuggagcCAGCCGCu -3'
miRNA:   3'- agGCCGGuuGCGCGUUGU--------------GUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 48790 0.66 0.754237
Target:  5'- gCgGGCCGAUGaUGCAGgACAgGCCGCc -3'
miRNA:   3'- aGgCCGGUUGC-GCGUUgUGU-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 57691 0.66 0.753211
Target:  5'- aUCGGCCAGgcauggcUGCGCAACGagauGGCCAa- -3'
miRNA:   3'- aGGCCGGUU-------GCGCGUUGUg---UUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 33718 0.66 0.751157
Target:  5'- -gCGGCgGugGCccgaacuacucgacGCAGCGCGGCCAgGa -3'
miRNA:   3'- agGCCGgUugCG--------------CGUUGUGUUGGUgU- -5'
19071 5' -54.9 NC_004684.1 + 51653 0.66 0.754237
Target:  5'- -gCGGCCAGuCGCuggGCAACuc-GCCACGa -3'
miRNA:   3'- agGCCGGUU-GCG---CGUUGuguUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59347 0.66 0.76846
Target:  5'- cCCGGCCGuugguguugaacACGCGCAcgguguccuggaaccGCcCGGCgGCAc -3'
miRNA:   3'- aGGCCGGU------------UGCGCGU---------------UGuGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 476 0.66 0.754237
Target:  5'- aCCgGGCCAGCGaggucgGCAGCACcgacAACgACAc -3'
miRNA:   3'- aGG-CCGGUUGCg-----CGUUGUG----UUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 42055 0.66 0.754237
Target:  5'- -aUGGCCGACGgGCAGaaaGACCAg- -3'
miRNA:   3'- agGCCGGUUGCgCGUUgugUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 22723 0.66 0.754237
Target:  5'- --aGGCCGugGCugGCAcGCGCGACCGg- -3'
miRNA:   3'- aggCCGGUugCG--CGU-UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 9499 0.66 0.771474
Target:  5'- cCCGGUCAcucccguacgagcuGCGC-CAGCucucCGACCGCGa -3'
miRNA:   3'- aGGCCGGU--------------UGCGcGUUGu---GUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13265 0.66 0.751157
Target:  5'- aCC-GCCAGCGCGCugguggccgccgguGGCugGugCGCGc -3'
miRNA:   3'- aGGcCGGUUGCGCG--------------UUGugUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 877 0.66 0.758327
Target:  5'- -aCGGCCAGCacgugauccccGCGCcGCGCAacauccuggucagcuACCACu -3'
miRNA:   3'- agGCCGGUUG-----------CGCGuUGUGU---------------UGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.