miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 476 0.66 0.754237
Target:  5'- aCCgGGCCAGCGaggucgGCAGCACcgacAACgACAc -3'
miRNA:   3'- aGG-CCGGUUGCg-----CGUUGUG----UUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 539 0.74 0.339658
Target:  5'- gCUGGCCAGCGCGguCGAgGCcGCCACc -3'
miRNA:   3'- aGGCCGGUUGCGC--GUUgUGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 630 0.7 0.560452
Target:  5'- cCUGGCCGACGaGCAcgGCGACCcCAa -3'
miRNA:   3'- aGGCCGGUUGCgCGUugUGUUGGuGU- -5'
19071 5' -54.9 NC_004684.1 + 681 0.68 0.669269
Target:  5'- aCCGaGuUCGcCGCGCAGCGCAagACCGCc -3'
miRNA:   3'- aGGC-C-GGUuGCGCGUUGUGU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 839 0.67 0.722987
Target:  5'- uUCCGGUgaGGCGCaCAACGCcuACCGCc -3'
miRNA:   3'- -AGGCCGg-UUGCGcGUUGUGu-UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 877 0.66 0.758327
Target:  5'- -aCGGCCAGCacgugauccccGCGCcGCGCAacauccuggucagcuACCACu -3'
miRNA:   3'- agGCCGGUUG-----------CGCGuUGUGU---------------UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 992 0.66 0.784381
Target:  5'- cUCGGCCAGCaccaagGUGCGgagauuuccaccGCGCAGCuCGCGg -3'
miRNA:   3'- aGGCCGGUUG------CGCGU------------UGUGUUG-GUGU- -5'
19071 5' -54.9 NC_004684.1 + 1258 0.7 0.539101
Target:  5'- cCCGGCCcaGAUGCGCuGGCugGugGCCAUg -3'
miRNA:   3'- aGGCCGG--UUGCGCG-UUGugU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1289 0.76 0.265313
Target:  5'- uUCCGGUacGCGCGCGACGCGugGCCGg- -3'
miRNA:   3'- -AGGCCGguUGCGCGUUGUGU--UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 1379 0.69 0.625606
Target:  5'- cCUGGCCGACGC-CAAgGCcGCCGu- -3'
miRNA:   3'- aGGCCGGUUGCGcGUUgUGuUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 1407 0.66 0.794132
Target:  5'- aCCGGU--ACGgGCGGCugAGCCuGCGc -3'
miRNA:   3'- aGGCCGguUGCgCGUUGugUUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 1518 0.67 0.701689
Target:  5'- gCCGcGCuCAACgGCGaCGACGCGACCcuGCGc -3'
miRNA:   3'- aGGC-CG-GUUG-CGC-GUUGUGUUGG--UGU- -5'
19071 5' -54.9 NC_004684.1 + 1691 0.67 0.690935
Target:  5'- gCCGaGCUGGCGCGCAu--CGAgCGCAa -3'
miRNA:   3'- aGGC-CGGUUGCGCGUuguGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 1721 0.7 0.518035
Target:  5'- aCCGGCCAGUGcCGCGACcucACcACCACc -3'
miRNA:   3'- aGGCCGGUUGC-GCGUUG---UGuUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 1964 0.68 0.669269
Target:  5'- gCCGcacGCCAGCGCaGCGccuggcGCGCgAACCGCGu -3'
miRNA:   3'- aGGC---CGGUUGCG-CGU------UGUG-UUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2080 0.71 0.457023
Target:  5'- gCUGGCCGugGUGCAcaGCGaGGCCGCc -3'
miRNA:   3'- aGGCCGGUugCGCGU--UGUgUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 2175 0.69 0.614681
Target:  5'- -aCGGUCAugGCccgcgagguGCcGCACGGCCACu -3'
miRNA:   3'- agGCCGGUugCG---------CGuUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 2527 0.77 0.221517
Target:  5'- aCCGGaCAACGCGCAcCACcccACCACAa -3'
miRNA:   3'- aGGCCgGUUGCGCGUuGUGu--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2707 0.71 0.465937
Target:  5'- cCUGGCCggUGCcggggGCAagugcgccacaccGCACGGCCACAc -3'
miRNA:   3'- aGGCCGGuuGCG-----CGU-------------UGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 2883 0.71 0.457023
Target:  5'- aCCuGCUggUGCGCAACACGuucGCCgACAa -3'
miRNA:   3'- aGGcCGGuuGCGCGUUGUGU---UGG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.