Results 1 - 20 of 342 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19071 | 5' | -54.9 | NC_004684.1 | + | 28261 | 0.73 | 0.356227 |
Target: 5'- cCCGGCCAGCcUGguGCGCGagGCCGCu -3' miRNA: 3'- aGGCCGGUUGcGCguUGUGU--UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 51562 | 0.74 | 0.323655 |
Target: 5'- cUCUGcGCCAguGCGCGCuGCGCGGCgGCGa -3' miRNA: 3'- -AGGC-CGGU--UGCGCGuUGUGUUGgUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 25611 | 0.74 | 0.331586 |
Target: 5'- gCCGGgCAcauGCGCGCGACGCuGCC-CAa -3' miRNA: 3'- aGGCCgGU---UGCGCGUUGUGuUGGuGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 10496 | 0.74 | 0.331586 |
Target: 5'- cCCGGCCGACGC---ACugGGCCGCc -3' miRNA: 3'- aGGCCGGUUGCGcguUGugUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 21291 | 0.74 | 0.331586 |
Target: 5'- cCCGGCCGuaucUGCGCAACGCAGgCGa- -3' miRNA: 3'- aGGCCGGUu---GCGCGUUGUGUUgGUgu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 40069 | 0.74 | 0.339658 |
Target: 5'- gUUGGUCAGCGUGCGGuCGCAgauACCGCAg -3' miRNA: 3'- aGGCCGGUUGCGCGUU-GUGU---UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 45643 | 0.74 | 0.339658 |
Target: 5'- --aGGCgCAGCGCGCGGC-CGACCAUc -3' miRNA: 3'- aggCCG-GUUGCGCGUUGuGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 7317 | 0.74 | 0.347872 |
Target: 5'- cCCGGCCAugGC-CGACGCGugCuCGg -3' miRNA: 3'- aGGCCGGUugCGcGUUGUGUugGuGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 57167 | 0.73 | 0.355385 |
Target: 5'- -gUGGCCGACGCGCAcgcucggGCGCAggcggGCCugGa -3' miRNA: 3'- agGCCGGUUGCGCGU-------UGUGU-----UGGugU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 37356 | 0.74 | 0.323655 |
Target: 5'- aCCGGCgAGCGCGCGuucacGCuCAGCCAgGa -3' miRNA: 3'- aGGCCGgUUGCGCGU-----UGuGUUGGUgU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 6629 | 0.75 | 0.289005 |
Target: 5'- cCUGGCCAgggccgugcucccugACGUGCAGCGCGgugucgacauGCCACGg -3' miRNA: 3'- aGGCCGGU---------------UGCGCGUUGUGU----------UGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 62938 | 0.75 | 0.272114 |
Target: 5'- gCCGaCCAGCGCGCGGCGCGcGCCgACGa -3' miRNA: 3'- aGGCcGGUUGCGCGUUGUGU-UGG-UGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 11451 | 0.79 | 0.152263 |
Target: 5'- aCCgGGCCGACGCGCAcCACggUCACc -3' miRNA: 3'- aGG-CCGGUUGCGCGUuGUGuuGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 15144 | 0.78 | 0.179159 |
Target: 5'- aUCCacGCCAGCGCGCAGCugGccGCCGCc -3' miRNA: 3'- -AGGc-CGGUUGCGCGUUGugU--UGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 4725 | 0.77 | 0.204712 |
Target: 5'- -aCGGCCAGgaccuCGCGCAcggcCACAGCCGCAa -3' miRNA: 3'- agGCCGGUU-----GCGCGUu---GUGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 43238 | 0.77 | 0.215789 |
Target: 5'- uUCUcGCCAGCGCGCGggccggagaGCACGGCCAUg -3' miRNA: 3'- -AGGcCGGUUGCGCGU---------UGUGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 15826 | 0.77 | 0.221517 |
Target: 5'- cCCGGUgG-CGCGCGGCAUcGCCACAc -3' miRNA: 3'- aGGCCGgUuGCGCGUUGUGuUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 10586 | 0.77 | 0.233363 |
Target: 5'- aUCCGGCUgguucGGCGCGCGagguGCGCAACUGCc -3' miRNA: 3'- -AGGCCGG-----UUGCGCGU----UGUGUUGGUGu -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 52907 | 0.76 | 0.239484 |
Target: 5'- gUCCGGCCAGCaCgGCGGCGUGGCCGCAu -3' miRNA: 3'- -AGGCCGGUUGcG-CGUUGUGUUGGUGU- -5' |
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19071 | 5' | -54.9 | NC_004684.1 | + | 1289 | 0.76 | 0.265313 |
Target: 5'- uUCCGGUacGCGCGCGACGCGugGCCGg- -3' miRNA: 3'- -AGGCCGguUGCGCGUUGUGU--UGGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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