miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 19646 1.09 0.00138
Target:  5'- gUCCGGCCAACGCGCAACACAACCACAc -3'
miRNA:   3'- -AGGCCGGUUGCGCGUUGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 13118 0.8 0.144144
Target:  5'- aCCGGCCAGCGCGgCAGCuucuCCACGc -3'
miRNA:   3'- aGGCCGGUUGCGC-GUUGuguuGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 11451 0.79 0.152263
Target:  5'- aCCgGGCCGACGCGCAcCACggUCACc -3'
miRNA:   3'- aGG-CCGGUUGCGCGUuGUGuuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 66096 0.79 0.160358
Target:  5'- gUCCGGCCAcgcgucGCGCGCGuaccggaACAUGGCCACc -3'
miRNA:   3'- -AGGCCGGU------UGCGCGU-------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 16480 0.79 0.1744
Target:  5'- gUCCGGCC-ACGUGCAGCuggcCAugCACGa -3'
miRNA:   3'- -AGGCCGGuUGCGCGUUGu---GUugGUGU- -5'
19071 5' -54.9 NC_004684.1 + 15144 0.78 0.179159
Target:  5'- aUCCacGCCAGCGCGCAGCugGccGCCGCc -3'
miRNA:   3'- -AGGc-CGGUUGCGCGUUGugU--UGGUGu -5'
19071 5' -54.9 NC_004684.1 + 4725 0.77 0.204712
Target:  5'- -aCGGCCAGgaccuCGCGCAcggcCACAGCCGCAa -3'
miRNA:   3'- agGCCGGUU-----GCGCGUu---GUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 59895 0.77 0.210188
Target:  5'- -gCGGCCAGCGCGUAG-ACAACCAg- -3'
miRNA:   3'- agGCCGGUUGCGCGUUgUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 43238 0.77 0.215789
Target:  5'- uUCUcGCCAGCGCGCGggccggagaGCACGGCCAUg -3'
miRNA:   3'- -AGGcCGGUUGCGCGU---------UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 63256 0.77 0.221517
Target:  5'- gUCCGcGCCGAUGCGCucCugGACCugGa -3'
miRNA:   3'- -AGGC-CGGUUGCGCGuuGugUUGGugU- -5'
19071 5' -54.9 NC_004684.1 + 2527 0.77 0.221517
Target:  5'- aCCGGaCAACGCGCAcCACcccACCACAa -3'
miRNA:   3'- aGGCCgGUUGCGCGUuGUGu--UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 57375 0.77 0.221517
Target:  5'- cCCGGUCGGCGCGCGGCAgGuCCgGCAg -3'
miRNA:   3'- aGGCCGGUUGCGCGUUGUgUuGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 15826 0.77 0.221517
Target:  5'- cCCGGUgG-CGCGCGGCAUcGCCACAc -3'
miRNA:   3'- aGGCCGgUuGCGCGUUGUGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 63687 0.77 0.226193
Target:  5'- aCCGGCCAGCGCGgCGGCGCuggcgaucuccuGCCAg- -3'
miRNA:   3'- aGGCCGGUUGCGC-GUUGUGu-----------UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 10586 0.77 0.233363
Target:  5'- aUCCGGCUgguucGGCGCGCGagguGCGCAACUGCc -3'
miRNA:   3'- -AGGCCGG-----UUGCGCGU----UGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 52907 0.76 0.239484
Target:  5'- gUCCGGCCAGCaCgGCGGCGUGGCCGCAu -3'
miRNA:   3'- -AGGCCGGUUGcG-CGUUGUGUUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 37248 0.76 0.245738
Target:  5'- aCUGGCCGACGCGCAcacuGCGCGguGCCu-- -3'
miRNA:   3'- aGGCCGGUUGCGCGU----UGUGU--UGGugu -5'
19071 5' -54.9 NC_004684.1 + 16203 0.76 0.258651
Target:  5'- -aCGGCCAggGCGCGCGguccauggcccgGCGCAucgGCCACAc -3'
miRNA:   3'- agGCCGGU--UGCGCGU------------UGUGU---UGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 1289 0.76 0.265313
Target:  5'- uUCCGGUacGCGCGCGACGCGugGCCGg- -3'
miRNA:   3'- -AGGCCGguUGCGCGUUGUGU--UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 9423 0.76 0.265313
Target:  5'- cUCGGCCAgcaGCGUGCGcAC-CAGCCGCAg -3'
miRNA:   3'- aGGCCGGU---UGCGCGU-UGuGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.